Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03729 and BPUM_2225
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:15
# Commandline: needle
# -asequence dna-align/BSNT_03729___pstA.1.24716.seq
# -bsequence dna-align/BPUM_2225___pstA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03729___pstA-BPUM_2225___pstA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03729___pstA-BPUM_2225___pstA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03729___pstA
# 2: BPUM_2225___pstA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 898
# Identity: 669/898 (74.5%)
# Similarity: 669/898 (74.5%)
# Gaps: 26/898 ( 2.9%)
# Score: 2434.5
#
#
#=======================================
BSNT_03729___ 1 ATGAACCGCAAAATAACAGATAAACTGGCGACCGGAATGTTTGGTTTGTG 50
|||||..|||||||.||.|||....|.||.||....||.|||||.||.||
BPUM_2225___p 1 ATGAATAGCAAAATGACCGATCGTTTTGCCACATTTATATTTGGATTATG 50
BSNT_03729___ 51 TGCAGCCATTATCGCTGCCATTTTAGTAGGTTTGTTTTCCTATATTATTA 100
||||||||||||..|.||.|||.|.||.|||||||||||.|||||.|||.
BPUM_2225___p 51 TGCAGCCATTATTACGGCGATTCTCGTTGGTTTGTTTTCTTATATCATTT 100
BSNT_03729___ 101 TAAACGGTG--------TTTCTCAGCTCAGTTTTC-AATTTATTACAACA 141
|.||||||| || |..|||| |.|||.|.|||||.
BPUM_2225___p 101 TCAACGGTGCAAAAGAATT---------AAATTTCGACTTTTTAACAACC 141
BSNT_03729___ 142 AAATCGAGCGCCATTGCAGCTGGAGGAGGCATACGAGATCAGCTGTTTAA 191
...||.||.||.||||...||||.||.||.||..|.||||||||.|||||
BPUM_2225___p 142 CGCTCAAGTGCGATTGGCTCTGGCGGCGGTATCAGGGATCAGCTCTTTAA 191
BSNT_03729___ 192 CTCCTTTTATATTTTGTTTATTACAATGCTGATTACAATCCCGCTCGGTG 241
|||.||||||||||||||||||||.||||||||.|||.|.|||||.||.|
BPUM_2225___p 192 CTCGTTTTATATTTTGTTTATTACGATGCTGATCACAGTACCGCTTGGCG 241
BSNT_03729___ 242 TGGGCGGCGGAGTCTTCATGGCTGAATACGCGCCTAATAACAAAGTAACT 291
|.|||||.||.||.|..|||||.||.|||||||||.|.||||||||.||.
BPUM_2225___p 242 TCGGCGGTGGCGTGTATATGGCAGAGTACGCGCCTCAAAACAAAGTCACA 291
BSNT_03729___ 292 GACTTCATCAGAACATGTATAGAGGTGCTTTCATCTCTTCCGTCTATTGT 341
||.||.||..|.||||||||.||.|||||.||.||.|||||.|||||.||
BPUM_2225___p 292 GATTTTATTCGTACATGTATTGAAGTGCTGTCTTCGCTTCCATCTATCGT 341
BSNT_03729___ 342 CATTGGGATGTTTGGATTATTGATGTTTGTCAACTTAACAGGCTGGGGAT 391
||||||.||||||||.|||.|.||||||||.||.||||||||||||||.|
BPUM_2225___p 342 CATTGGTATGTTTGGTTTACTCATGTTTGTGAATTTAACAGGCTGGGGCT 391
BSNT_03729___ 392 ATACGATCATAGGCGGGGCGCTTGCGTTAACTGTTTTTAACCTTCCTGTC 441
||||||||||.||.||.||.|||||..|.|||||.||||||||.||.||.
BPUM_2225___p 392 ATACGATCATTGGGGGAGCTCTTGCACTCACTGTGTTTAACCTGCCGGTG 441
BSNT_03729___ 442 ATGGTGCGTGTGACAGAAGACGCGATCCGTTCAGTCCCTAAAGATCTGAA 491
|||||..|.||.||||||||.|||.|.||.|||||.||.||.||||..||
BPUM_2225___p 442 ATGGTCAGGGTCACAGAAGATGCGCTGCGCTCAGTACCGAAGGATCAAAA 491
BSNT_03729___ 492 GGAAGCCTCTCTCGCTTTAGGTGTATCACG--CTGGCATACCGTAAAAAC 539
||||||.|||||.||..|.|||||| ||| .|||||.||.||.|||||
BPUM_2225___p 492 GGAAGCATCTCTTGCACTTGGTGTA--ACGAAGTGGCACACAGTCAAAAC 539
BSNT_03729___ 540 GGTTTTAATTCCAAGTGCGATTCCTTCTATTATCACAGGAGCAATTTTAG 589
.||..|.||||||.|||||.||||.|||||||||||.||.||.|||||||
BPUM_2225___p 540 AGTCCTTATTCCAGGTGCGCTTCCATCTATTATCACGGGTGCGATTTTAG 589
BSNT_03729___ 590 CGTCAGGAAGGGTGTTCGGGGAAGCGGCCG-CATTATTATTTACGGCAGG 638
|.||||||||.||.||.||.||.|||||.| |.||.|| |||||.|||||
BPUM_2225___p 590 CATCAGGAAGAGTCTTTGGTGAGGCGGCAGCCCTTCTT-TTTACAGCAGG 638
BSNT_03729___ 639 CCTGACAACACCGCGTCTTAATTTTACGGAGTGGAACCCGTTTTCGGAAA 688
.||..|.||||||||.|||.||||.||..|.||||..||.|||||.||.|
BPUM_2225___p 639 TCTCTCTACACCGCGCCTTGATTTCACAAACTGGAGTCCTTTTTCTGATA 688
BSNT_03729___ 689 CATCACCGCTTAATATTTTCAGGCCCGCTGAAACACTTGCGGTCCACATT 738
|.||||||||.|||.|.||.||.||.||.||||||.|.||.||.||.||.
BPUM_2225___p 689 CGTCACCGCTGAATGTATTTAGACCGGCAGAAACATTAGCCGTTCATATA 738
BSNT_03729___ 739 TGGAACGTCAATACACAAGGAATGATTCCGGATGCTGAAGCGATTGCCAA 788
|||||||||||||||||||||||.|||||.|||||.||.||.|||||.||
BPUM_2225___p 739 TGGAACGTCAATACACAAGGAATCATTCCAGATGCAGAGGCCATTGCAAA 788
BSNT_03729___ 789 CGGTGGTTCTGCCGTGCTGGTGATTTCTGTTCTT-GTGTTTAATCTCGCA 837
.||||..||.||.||.||.|||.||||.| |||| .||||.||..|.|||
BPUM_2225___p 789 TGGTGCATCAGCTGTACTTGTGCTTTCAG-TCTTATTGTTCAACTTAGCA 837
BSNT_03729___ 838 GCGAGATGGCTTGGCACGATGATCTACAAGAAGCTTACGGCAAATTAG 885
||.|||||||||||..|..|.||..|.||.|||||||||.||||.||.
BPUM_2225___p 838 GCTAGATGGCTTGGTTCATTTATTCATAAAAAGCTTACGTCAAAATAA 885
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