Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03727 and BPUM_2224

See Amino acid alignment / Visit BSNT_03727 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:15
# Commandline: needle
#    -asequence dna-align/BSNT_03727___pstBA.1.24716.seq
#    -bsequence dna-align/BPUM_2224___pstBA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03727___pstBA-BPUM_2224___pstBA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03727___pstBA-BPUM_2224___pstBA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03727___pstBA
# 2: BPUM_2224___pstBA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 908
# Identity:     600/908 (66.1%)
# Similarity:   600/908 (66.1%)
# Gaps:         130/908 (14.3%)
# Score: 1976.0
# 
#
#=======================================

BSNT_03727___      1 ATGGCTTGGCACGATGATCTACAAGAAGCTTACGGCAAATTAGAACGGAA     50
                     ||||.|   || .|||  |||..||||         |||         ||
BPUM_2224___p      1 ATGGTT---CA-AATG--CTAGCAGAA---------AAA---------AA     26

BSNT_03727___     51 AGAG------GCGAAAAACATGTCTGAACAAATGGTAAAAGAAAAACCTG     94
                     ||||      ||||||||   |.||..||                     
BPUM_2224___p     27 AGAGATTGCAGCGAAAAA---GGCTCCAC---------------------     52

BSNT_03727___     95 AGCGAGCTGTTATTGTTCCGAAGCAGAAC--------CACGTGCTTGAGG    136
                                    |||  ||||.||||        ||.||||   |||
BPUM_2224___p     53 ---------------TTC--AAGCGGAACAGATTTTACATGTGC---AGG     82

BSNT_03727___    137 -TCAAAGATCTGTCTATTTTTTACGGAAATAAACAAGCCGT---TCA---    179
                      |..|||       .||||.|||.||..|.|||..|||.||   |||   
BPUM_2224___p     83 ATTTAAG-------CATTTATTATGGTGAGAAAAGAGCGGTCAATCACAT    125

BSNT_03727___    180 -TCATGTAAACATGGATATTGAAAAAAATGCGGTGACTGCTTTAATTGGG    228
                      ||||       |.||.|||||.||.||||||.|.||.||.|||||.||.
BPUM_2224___p    126 TTCAT-------TCGAGATTGAGAAGAATGCGATCACCGCATTAATCGGC    168

BSNT_03727___    229 CCGTCGGGATGCGGAAAATCTACTTTTTTGAGAAATATTAACCGAATGAA    278
                     ||.||.||.|||||.||.|||||.|||||..|.|..||||||||.|||||
BPUM_2224___p    169 CCATCCGGCTGCGGGAAGTCTACCTTTTTACGTAGCATTAACCGGATGAA    218

BSNT_03727___    279 CGATTTAATTCCATCTGC-AAGAGCGGAAGGTGAAATCCTTTATGAAGGA    327
                     |||||||||||||..||| ||.|| .|||||.|..|||.|.||.||||||
BPUM_2224___p    219 CGATTTAATTCCAGGTGCGAAAAG-TGAAGGGGCGATCATGTACGAAGGA    267

BSNT_03727___    328 TTAAATATATTGGGCGGCAATATTAACGTTGTCAGCTTGAGAAGAGAAAT    377
                     ||||||||.||||..|.|..||||||.||.||.|..||.|||||||||||
BPUM_2224___p    268 TTAAATATTTTGGATGACCGTATTAATGTCGTGAATTTAAGAAGAGAAAT    317

BSNT_03727___    378 CGGAATGGTTTTCCAAAAACCAAATCCATTTCCGAAATCGATCTATGCGA    427
                     |||.|||||.|||||||||||||||||.|||||.|||||||||||....|
BPUM_2224___p    318 CGGGATGGTCTTCCAAAAACCAAATCCTTTTCCTAAATCGATCTACAATA    367

BSNT_03727___    428 ATATCACACATGCATTGAAATATGCCGGAGAGCGGAATAAAG-----CTG    472
                     |.|||||.|||||.||.||.|||||.||     ||||.||||     |||
BPUM_2224___p    368 ACATCACCCATGCGTTAAAGTATGCTGG-----GGAAAAAAGAAAATCTG    412

BSNT_03727___    473 TTTTAGATGGAAT--TGTGGAAGAAAGTTTAACAAAAGCGGCTCTCTGGG    520
                     |..|.||||  ||  .||.||||||||.||||||||.|||||..|.||||
BPUM_2224___p    413 TGCTTGATG--ATGCGGTTGAAGAAAGCTTAACAAAGGCGGCGTTGTGGG    460

BSNT_03727___    521 ATGAGGTGAAGGATCGTTTACATTCATCCGCACTCTCGTTATCCGGCGGC    570
                     |||||||.||.||.|||||.||...||||||..|.||.||.||.|||||.
BPUM_2224___p    461 ATGAGGTCAAAGACCGTTTGCACCGATCCGCTTTGTCATTGTCAGGCGGT    510

BSNT_03727___    571 CAGCAGCAGCGTTTATGCATCGCGAGAACGCTTGCGATGAAGCCGGCTGT    620
                     |||||||||||..|.||.||.||..|.||.|||||||||||.||...|||
BPUM_2224___p    511 CAGCAGCAGCGCCTTTGTATTGCACGTACACTTGCGATGAAACCAAGTGT    560

BSNT_03727___    621 TCTTCTGCTTGATGAACCAGCTTCAGCGCTTGATCCGATTTCAAATGCGA    670
                     |.|.||..|.||||||||||||||.||.||.||.||.||.||||||||||
BPUM_2224___p    561 TTTGCTATTAGATGAACCAGCTTCTGCCCTAGACCCTATCTCAAATGCGA    610

BSNT_03727___    671 AAAT---AGAGGAATTAATTACAGGATTGAAAAGAGAATACTCAATTATT    717
                     ||||   ||||..||||..|   |.||||||||..||.||.|||||..|.
BPUM_2224___p    611 AAATTGAAGAGCTATTAGGT---GAATTGAAAAATGATTATTCAATCGTC    657

BSNT_03727___    718 ATTGTCACGCACAATATGCAGCAGGCTCTGCGGGTTTCTGACCGGACGGC    767
                     |||||.||.|||||.||||||||.||.||.||.||.|||||.||.|||||
BPUM_2224___p    658 ATTGTGACACACAACATGCAGCAAGCGCTCCGTGTATCTGATCGTACGGC    707

BSNT_03727___    768 ATTCTTTTTAAACGGCGAGCTTGTAGAATACG--GACAGACCGAACAGAT    815
                     .||.||.||||||||.||.||.||||||||.|  |.|  ||.||||..||
BPUM_2224___p    708 CTTTTTCTTAAACGGAGATCTAGTAGAATATGATGCC--ACAGAACGTAT    755

BSNT_03727___    816 TTTCACGAGTCCGAAAAAGCAAAAGACAGAGGATTATATTAATGGGAAAT    865
                     .||.||..||||.....|||||||.|||||.||.|||||.|||||...||
BPUM_2224___p    756 CTTTACACGTCCTGCGCAGCAAAAAACAGAAGACTATATCAATGGTCGAT    805

BSNT_03727___    866 TCGGATAG    873
                     |.|||||.
BPUM_2224___p    806 TTGGATAA    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03727 and BPUM_2224

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
