Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03724 and BPUM_2222

See Amino acid alignment / Visit BSNT_03724 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:15
# Commandline: needle
#    -asequence dna-align/BSNT_03724___yqzC.1.24716.seq
#    -bsequence dna-align/BPUM_2222___yqzC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03724___yqzC-BPUM_2222___yqzC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03724___yqzC-BPUM_2222___yqzC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03724___yqzC
# 2: BPUM_2222___yqzC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 517
# Identity:     335/517 (64.8%)
# Similarity:   335/517 (64.8%)
# Gaps:          68/517 (13.2%)
# Score: 995.0
# 
#
#=======================================

BSNT_03724___      1 ATGAC----AAAACGGGGCATTCAGGCATTTGCTGGCGGCATCATTTTAG     46
                     |||||    ||||    ||||.||..|.|||||.|..||.||.|||.|.|
BPUM_2222___y      1 ATGACGAAAAAAA----GCATCCAAACGTTTGCAGCAGGTATGATTCTTG     46

BSNT_03724___     47 CGACAGCCGTTCTTGCAGCT-GTTTTTTATCTGACTGACGAAGACCAGGC     95
                     |.||.|..|||||.|| |.| |||||||..||.||||...|||||.|.||
BPUM_2222___y     47 CAACTGGAGTTCTGGC-GATCGTTTTTTTCCTCACTGGAAAAGACGATGC     95

BSNT_03724___     96 CGCTGCTG---------TAAAAGATA-------ATAAAACAGTAACTGAA    129
                     .||.||||         .||||||.|       |.|.|| ||||||.||.
BPUM_2222___y     96 AGCAGCTGATACAACAACAAAAGAAACCCTCGCACAGAA-AGTAACAGAC    144

BSNT_03724___    130 CAAGACGTGAACAATTACCTTGATTCTAAAAAAATGGTTTCTGTGAACCG    179
                     .||||||||||.||.||..|.||.||.||||||...||..||||.|.|||
BPUM_2222___y    145 AAAGACGTGAAAAACTATTTAGACTCCAAAAAAGAAGTCACTGTCAGCCG    194

BSNT_03724___    180 TGATGAA--TATCAAAAACTTCTTGATTCAAAAGAGAAATCGTTG-----    222
                     |||  ||  ||.||..|.||||||||.|..||.||.|||.||.||     
BPUM_2222___y    195 TGA--AACGTACCAGCAGCTTCTTGACTATAAGGAAAAAGCGCTGAAGGC    242

BSNT_03724___    223 -ACCGATGACAGCAG---CTCAGA------CACGAAAACA-GAC------    255
                      |..||.|||.|| |   ||.|||      .||.||||.| |||      
BPUM_2222___y    243 AAATGAAGACGGC-GATTCTAAGAATGATCAACAAAAAGAGGACAAGCCT    291

BSNT_03724___    256 AAAGTCAAAACGTACAAGCTCAAA------ATTAAAGATGGCATGAGCAC    299
                     ||||.||||    .|||  |||||      ||||||.|.||.|||||.||
BPUM_2222___y    292 AAAGGCAAA----TCAA--TCAAATTTGTGATTAAAAACGGTATGAGTAC    335

BSNT_03724___    300 TGCGGATGTATCTGCTATTCTTGAAAAAGAGGGCATTATCTCTTCGGCTC    349
                     ....|||||.||.|..||.||||||||.||.|||||.|||...|||.||.
BPUM_2222___y    336 AAGTGATGTTTCAGACATGCTTGAAAAGGACGGCATCATCAACTCGTCTA    385

BSNT_03724___    350 AAGACTTTAATGACTATGTCATTGATGCCGGCTATCACAAAGAAATTCGT    399
                     ||||.||.|||||.||.||.|||||.|||||.||.||.||||||||||||
BPUM_2222___y    386 AAGATTTCAATGATTACGTGATTGACGCCGGTTACCATAAAGAAATTCGT    435

BSNT_03724___    400 GCCGGCGAGTTTAAAGTAAAATCAGACATGA-GTTTCAAAAAGATCGTAA    448
                     ||.|||.|.||.||..|||||.|||..|||| |||| |||.|||||||.|
BPUM_2222___y    436 GCAGGCAAATTCAATTTAAAAACAGGAATGACGTTT-AAACAGATCGTCA    484

BSNT_03724___    449 AAACGTTAACACGATAA    465
                     ||.|.||||||..||||
BPUM_2222___y    485 AAGCCTTAACAAAATAA    501


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