Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03718 and BPUM_2219
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:15
# Commandline: needle
# -asequence dna-align/BSNT_03718___yqgN.1.24716.seq
# -bsequence dna-align/BPUM_2219___yqgN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03718___yqgN-BPUM_2219___yqgN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03718___yqgN-BPUM_2219___yqgN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03718___yqgN
# 2: BPUM_2219___yqgN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 665
# Identity: 350/665 (52.6%)
# Similarity: 350/665 (52.6%)
# Gaps: 205/665 (30.8%)
# Score: 818.0
#
#
#=======================================
BSNT_03718___ 1 ATGAAA--------------TCACA-ATT----AAG-------AAAAAAG 24
|||||| |||.| ||| ||| |.|.|||
BPUM_2219___y 1 ATGAAAAAGGAGCTTCGCCTTCAAACATTAGCCAAGCTTGATCAGATAAG 50
BSNT_03718___ 25 ACGCTGGAG---------GCACTATCTGCTTTATCAAATGAAGATATTCT 65
|||||.|| |||.|| |.|||||| ||
BPUM_2219___y 51 -CGCTGAAGAATTTGAGCGCAGTA-CCGCTTTA---------------CT 83
BSNT_03718___ 66 TCAAAAAACGGAACGTATGTATAAGTACTTGTTTTCTCTGCCGGAGTGGC 115
|| ||.||.||||.||....||.||.|..|||.
BPUM_2219___y 84 TC------------------ATGAGCACTTATTGCAGCTACCAGCATGGA 115
BSNT_03718___ 116 AAAATGCCGGC----ACCATTGCCGTCACTATTTCCAGAGGATTAGAGAT 161
|| |.||| ||.||.||..|.||.||.||.||||||..||||||
BPUM_2219___y 116 AA----CAGGCGAAAACGATCGCTTTGACAATGTCTAGAGGAAAAGAGAT 161
BSNT_03718___ 162 ACCGACGCGTCCTGTCATTGAGCAGGCTTGGGAAGAAGGGAAACAAGTTT 211
.|||||....|||.|.|||.|..|.||.|||||||||||.|||..|||.|
BPUM_2219___y 162 TCCGACATTGCCTCTGATTAAAAAAGCGTGGGAAGAAGGAAAAACAGTAT 211
BSNT_03718___ 212 GCATCCCAAAATGCCATCCGGACAC-GAAGAAA---------ATGCAATT 251
|.|||||.|..|||..||||.|.|| .||||.| ||| |||.
BPUM_2219___y 212 GTATCCCTACCTGCTTTCCGAAAACAAAAGAGATGACCTTTTATG-AATA 260
BSNT_03718___ 252 T-----CGC-ACATATCAGACTGATGA---TCAGCTCGAAACCGTGTATG 292
| ||| |||.| ||||| .||||| ||..|
BPUM_2219___y 261 TACACCCGCAACAAA-------GATGACATCCAGCT----ACTTT----- 294
BSNT_03718___ 293 CCGGACTGCTCGAGCCGGTAA-----TTGAAAAAACA---------AAAG 328
|||||..|.|||||.| | ||||....||| ||||
BPUM_2219___y 295 --GGACTATTGGAGCCCG--ATCCTCTTGAGTCTACAGCTGTACATAAAG 340
BSNT_03718___ 329 AAGTAAACCCATCACAAATTGACTTGATGATCGTTCCAGGTGTTTGTTTT 378
||| ||||| ||.|||||.||.||.||.||.||.||.||.
BPUM_2219___y 341 AAG-----CCATC-------GATTTGATCATTGTCCCTGGGGTGTGCTTC 378
BSNT_03718___ 379 GATGTTAACGGGTTTA--GGGTCGGCTTTGGAGGCGGCTATTATGATCGC 426
|| |.||||.|.||| ||.|.||.|||||.||||||||||||||.|||
BPUM_2219___y 379 GA--TCAACGTGGTTACCGGATTGGATTTGGGGGCGGCTATTATGACCGC 426
BSNT_03718___ 427 TATTTAAGTGAATATGAAGGGAAGACAGTCTC-ATTG--CTTTTGGAGTG 473
||.|||...||.|||.|.|| |||..| |||| |||| ||
BPUM_2219___y 427 TACTTAGCGGACTATCACGG------AGTAACGATTGCCCTTT----GT- 465
BSNT_03718___ 474 CCAGTTGTAT-----GC-------GCACGTACCCAGTCTG--CCGCATGA 509
||||.| || |||.||.||| ||.| .|.||.||
BPUM_2219___y 466 ----TTGTCTTTACAGCAAATCAAGCATGTGCCC--TCAGAAGCACACGA 509
BSNT_03718___ 510 CATCCCGGTACATAAGCTTGTAACAG------AGGATCGGATTATTTCTT 553
|||.||||||..||.|.|.|| ||| |||..|| |||
BPUM_2219___y 510 CATACCGGTATCTATGATGGT--CAGTGAAAAAGGCACG------TTC-- 549
BSNT_03718___ 554 GTTTTTCA----TAA 564
|.||| |||
BPUM_2219___y 550 ---TATCAAAGGTAA 561
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