Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03716 and BPUM_2218
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:14
# Commandline: needle
# -asequence dna-align/BSNT_03716___yqgO.1.24716.seq
# -bsequence dna-align/BPUM_2218___yqgO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03716___yqgO-BPUM_2218___yqgO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03716___yqgO-BPUM_2218___yqgO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03716___yqgO
# 2: BPUM_2218___yqgO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 188
# Identity: 116/188 (61.7%)
# Similarity: 116/188 (61.7%)
# Gaps: 25/188 (13.3%)
# Score: 276.5
#
#
#=======================================
BSNT_03716___ 1 ---ATGAA-AAAACTTTTGATATATGCCATT---TTCGCGGTTTCTGCCG 43
||||| |||| ||||.|....|||| |||.|..|.|.|||..
BPUM_2218___y 1 ATGATGAATAAAA----TGATTTGGAGCATTGTGTTCACACTGTTTGCAT 46
BSNT_03716___ 44 TCATGTT-TTAT-CAAAATCGCTACCGTCTTATGAATACTGTACTCAGCC 91
|| ||| ||.| ||||||||.||.||.||.|||||| .||..||.||
BPUM_2218___y 47 TC--GTTCTTGTGCAAAATCGTTATCGGCTCATGAAT-TTGATCTTAG-- 91
BSNT_03716___ 92 AGCCAGGAATCAGGCG-GTC----TTTTATCCATTTGTTTTTAAGAATTC 136
|.|| .||.||.|.| ||| ||||||..|.|.|.|..|.|.|||.|
BPUM_2218___y 92 -GTCA-AAACCAAGTGCGTCACTTTTTTATTAAGTGGCTGATGAAAATCC 139
BSNT_03716___ 137 CATTTATCCGCAATAAGTTTATACAGCAAGCTTTCTAA 174
|||.|.|.||.|..||.|||||.|..|||||.||||||
BPUM_2218___y 140 CATATTTTCGGACGAAATTTATTCGCCAAGCATTCTAA 177
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