Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03714 and BPUM_2217

See Amino acid alignment / Visit BSNT_03714 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:14
# Commandline: needle
#    -asequence dna-align/BSNT_03714___yqgP.1.24716.seq
#    -bsequence dna-align/BPUM_2217___yqgP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03714___yqgP-BPUM_2217___yqgP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03714___yqgP-BPUM_2217___yqgP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03714___yqgP
# 2: BPUM_2217___yqgP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1723
# Identity:     972/1723 (56.4%)
# Similarity:   972/1723 (56.4%)
# Gaps:         383/1723 (22.2%)
# Score: 2373.5
# 
#
#=======================================

BSNT_03714___      1 ----ATGTTTTTGCTGGAGTATACATATTGGAAAATTGCGGCGCACCTGG     46
                         ||||..|.|.|  |||.|  ||.||||..|.|||        .||.
BPUM_2217___y      1 ATGAATGTCATAGAT--AGTTT--ATTTTGGCGAGTTG--------TTGA     38

BSNT_03714___     47 TGAAT--------AGCGGGT-----ATGGCGTCATACAAGCCGGT-----     78
                     |||||        |..||||     |||| .|||   |||.|.||     
BPUM_2217___y     39 TGAATTAAGACAAAAAGGGTACGAGATGG-TTCA---AAGTCCGTATCCA     84

BSNT_03714___     79 GAGTCAGATGAAATATGGCTGGAAGCGCCGGAC--AAGTCCTCTC-----    121
                     ||   |||||||||||...|.|||||.||  ||  ||     |||     
BPUM_2217___y     85 GA---AGATGAAATATTTTTCGAAGCACC--ACGAAA-----CTCAGGAT    124

BSNT_03714___    122 ATGATCTAGTTCGTCTTTATAAGCACGATCTTGATTTCCGTCAAGAAATG    171
                     |||||||..|.|||||.||||...|.|||.|..||||..|.||.||.||.
BPUM_2217___y    125 ATGATCTTATCCGTCTATATAGAAAAGATGTGAATTTTAGACAGGAGATC    174

BSNT_03714___    172 GTTAGAGACATCGAAGAGCAGGCCGAACGAGTAGAACGAGTCAGACATCA    221
                     |||.||||.||.|||||||||     |||..|.|.|.||       ||||
BPUM_2217___y    175 GTTCGAGATATTGAAGAGCAG-----ACGTATCGGATGA-------ATCA    212

BSNT_03714___    222 ATTGGGCAGACGAAGG--ATG---AAGCTG---CTGAATGTGTT------    257
                     |.||   |||  .|||  |||   ||.|.|   ||..||.|.||      
BPUM_2217___y    213 ACTG---AGA--GAGGCCATGCGTAAACGGTCTCTTCATCTCTTACAGCT    257

BSNT_03714___    258 ---TTTTTCAACGGAAGCC--CCTGTTGATGACTGGGAAGAGAT------    296
                        .|||.||.|.||  ||  |||||.|||||.|||||.||..|      
BPUM_2217___y    258 CCAATTTACAGCTGA--CCATCCTGTAGATGATTGGGAGGACCTAAACGG    305

BSNT_03714___    297 -----TGCAAAAAAAATGTTTGAGAAGGGAACTGTGTCAGTTG-AGCCGG    340
                          .|||||||.|     |.|.||||..||.||..||..|| |     
BPUM_2217___y    306 TCAGCCGCAAAAACA-----TCAAAAGGTGACCGTTACACCTGTA-----    345

BSNT_03714___    341 CGATCGTTA--GAGGAACGATGCTTCGAGATGATCTTCA-----------    377
                           |||  ||      ||||    ||||..||||||           
BPUM_2217___y    346 ------TTACTGA------ATGC----AGATACTCTTCAACACGACGTGA    379

BSNT_03714___    378 ---AGCGGTTTTTCCA--------TCATTTCGTC-----CAGAAGATTGT    411
                        |||      |.||        |||.|.|.||     |||..|| |||
BPUM_2217___y    380 ACGAGC------TGCAAAAATGGCTCAATACATCGCTCACAGTGGA-TGT    422

BSNT_03714___    412 A-CAGAGG-AACACGCTTCGTTTGAAGACG----CGCAAATGGC-----G    450
                     | .||||| ||.|.|          |||||    ||.|.|||.|     |
BPUM_2217___y    423 AGAAGAGGCAAAAAG----------AGACGCAGCCGAAGATGTCATCCAG    462

BSNT_03714___    451 C-----GAGAACGT--TTC---CTTTCGCTAGTGCTGAAACAAGAAGAAC    490
                     |     |.||||||  |||   |.||      ||.|| |.||.|||.|.|
BPUM_2217___y    463 CTTAAAGTGAACGTACTTCAAGCATT------TGATG-ATCAGGAAAAGC    505

BSNT_03714___    491 AGAGAAAAACTGAAGCGGCGGTTTTTCAAAACGGAAAACCGTTTTTTGCA    540
                     ||.|..||...|||..|||.|||||||||||.||.|.||||.||||..|.
BPUM_2217___y    506 AGCGTGAACGAGAACGGGCCGTTTTTCAAAATGGCAGACCGATTTTCACC    555

BSNT_03714___    541 TATTTATTTATTGCGCTTCAGATCCTGATGTTTTTCTTGCTCGAAATAAA    590
                     ||..|..|.||.||..||||..|..||||||||.|.||.||.|||.||..
BPUM_2217___y    556 TACCTGCTCATCGCTGTTCAAGTGGTGATGTTTCTTTTACTTGAACTATT    605

BSNT_03714___    591 CGGGGGCAGCACAAATACGGAGACGCTGGTCGCTTTTGGAGCAAAAGAAA    640
                     .||.||.||.||.|||||||..||..|....||.|||||.||.|||.|.|
BPUM_2217___y    606 TGGCGGAAGTACCAATACGGCAACTTTAACAGCGTTTGGTGCTAAAAATA    655

BSNT_03714___    641 ACAGCCTAATTGCACAAGGAGAATGGTGGCGGCTTCTGACACCGATCGTG    690
                     |..|.||.||...|.|.||||||||||||||.||..|||||||.|| ||.
BPUM_2217___y    656 ATGGGCTGATCTTAGAGGGAGAATGGTGGCGCCTGATGACACCAAT-GTT    704

BSNT_03714___    691 CTT-CACATCGGCATAGCGCATTTAGCT-TTTAATACGCTGGCTTTATGG    738
                     .|| |||||.|||.|..||||.||| || ||||||||..|.|||.|.|||
BPUM_2217___y    705 TTTGCACATTGGCTTGACGCACTTA-CTCTTTAATACATTTGCTCTTTGG    753

BSNT_03714___    739 TCGGTTGGTACAGCGGTTGAGCGGATGTATGGATCGGGGAGATTTTTGCT    788
                     ||.||.||..|.||.||.|||.|.||.|||||.||..||.||||||||||
BPUM_2217___y    754 TCTGTAGGAGCGGCTGTGGAGAGAATTTATGGCTCATGGCGATTTTTGCT    803

BSNT_03714___    789 GATTTATCTGGCTGCTGGCATTACGGGTTCGATTGCGAGTTTTGTGTTCA    838
                     .||.|||.|...|.|.||||||...|||||.||||||||||||||.||.|
BPUM_2217___y    804 TATCTATTTCATTTCCGGCATTTTCGGTTCAATTGCGAGTTTTGTCTTTA    853

BSNT_03714___    839 GCCCGTAT----CCTTCG--GCAGGGGCATCAGGAGCCATATTCGGATGC    882
                           ||    ||.|||  ||.||.||||||||.||.||.||.||.|||
BPUM_2217___y    854 ------ATACCGCCATCGCAGCCGGTGCATCAGGTGCGATCTTTGGTTGC    897

BSNT_03714___    883 TTAGGTGCATTACTGTATGTTGCTTTGTCTAATCGAAAAATGTTTTTAAG    932
                     |||||||||.||.|.|||.|.||..|.|||||.||.||..|.||.||..|
BPUM_2217___y    898 TTAGGTGCACTATTATATTTGGCAATCTCTAACCGCAAGCTCTTCTTTCG    947

BSNT_03714___    933 AACCATAGGAACCAATATTATTGTCATTATTATCATCAATCTGGGCTTTG    982
                     .||.||.||.||.|||||||||||.|||||..||||||||.|.||..|.|
BPUM_2217___y    948 GACGATGGGGACAAATATTATTGTGATTATCCTCATCAATTTAGGAATCG    997

BSNT_03714___    983 GTTTTGCAGTTTCAAATATTGATAATTCAGGACATATCGGCGGCTTGATT   1032
                     |.|||.|.||.|||..|||||||||..|.||.||..|.|||||..||.||
BPUM_2217___y    998 GCTTTACCGTATCAGGTATTGATAACGCGGGGCACCTTGGCGGTCTGGTT   1047

BSNT_03714___   1033 GGCGGCTTTTTCGCTGC---AGCAG--CATTGGGGTTGCCCAAAGCCGG-   1076
                     |||||.|||||.|||||   |||.|  |      ||..|||.||.|.|| 
BPUM_2217___y   1048 GGCGGTTTTTTAGCTGCTTTAGCTGTCC------GTCTCCCTAAACAGGT   1091

BSNT_03714___   1077 --AGCCTTTGGAAAAAGATTGTTGTCAGCGGTTT-----TGCTGATTGCT   1119
                       |||||.| .||.|.|.||.|||..||...|.|     |||||||||.|
BPUM_2217___y   1092 GCAGCCTGT-CAAGATGTTTCTTGCTAGTATTGTACTACTGCTGATTGGT   1140

BSNT_03714___   1120 TTGGCTGCCGGATTT---TTATATTAC-GGATTGCATTC--GCCTTCACA   1163
                              ||.|||   ||.|| ||| ||.||.|||||  .|..|||.|
BPUM_2217___y   1141 ---------GGTTTTGGATTGTA-TACAGGGTTTCATTCAGACGATCAAA   1180

BSNT_03714___   1164 CCAGGAATCAGCGCTGATTCAG-----CAGGCAAGCGAG-CTGTATCAGG   1207
                       |||||.|||||     .|||     .|||| |||.|| ||.|.|.|.|
BPUM_2217___y   1181 --AGGAAGCAGCG-----GCAGTAAATGAGGC-AGCAAGTCTATTTGACG   1222

BSNT_03714___   1208 --AAGGAAAGTAT---GAAG-AAGTAACAGAATTGCTGAACGAAGAAGCA   1251
                       |||  ||.|||   |||| ||||||..|    .||..|.|||.|.|.|
BPUM_2217___y   1223 ATAAG--AACTATAGCGAAGCAAGTAAGCG----TCTAGAGGAATATGTA   1266

BSNT_03714___   1252 GCGCAAAAAGATGCCTCTGCCGATCTTTTGAAAATTCTTGCTGTTTCTGA   1301
                     ...|||||||||||.||.|||||...|.|..|.||              |
BPUM_2217___y   1267 CATCAAAAAGATGCATCAGCCGAGGCTCTCCATAT--------------A   1302

BSNT_03714___   1302 TAT-TAAAATCGG----------CGAATA---TGATCAGGCGGTTTCCCT   1337
                     ||| .|..|||||          ||.|.|   |||..|.|||.||..|.|
BPUM_2217___y   1303 TATGCACTATCGGAAGCGCAGCTCGGACACCTTGACAAAGCGATTGGCTT   1352

BSNT_03714___   1338 TTTGGAACGAGCAGTGAAAAAAGAACCTAAAGACCATGCCTCATATTACT   1387
                     |||..||.|..||.|.||||||||.||   |||..|| ||..||| .|||
BPUM_2217___y   1353 TTTACAAAGGTCACTTAAAAAAGATCC---AGATGAT-CCAAATA-AACT   1397

BSNT_03714___   1388 -----ATTTAGCCTTATTGTATGCGGAAAAAAATGAGCTTGCACAAGCAG   1432
                          |||||.|.||.|||||.|..||||||...|||...||..||||||
BPUM_2217___y   1398 GTATCATTTATCGTTGTTGTACGTAGAAAAAGGGGAGACAGCGAAAGCAG   1447

BSNT_03714___   1433 AAAAGGCCATCAGGTTGGCTGT----GAAACTTAAGCCGAAGGAGCAGCG   1478
                     ||               |.|.|    ||||         |||||..||  
BPUM_2217___y   1448 AA---------------GATCTAATAGAAA---------AAGGATTAG--   1471

BSNT_03714___   1479 CTACAAGG------------------------AGCTTCAGCAACAAATTG   1504
                       ||.|.|                        ||||..|.|||.|.||||
BPUM_2217___y   1472 --ACCAAGATCCAAAAAATGATCAATTGTTAAAGCTGAAACAATATATTG   1519

BSNT_03714___   1505 AAAACA---ATAAAGAATCATAA   1524
                     ||||||   |.|.|.|.|.|   
BPUM_2217___y   1520 AAAACACGCAAACACATTGA---   1539


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