Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03711 and BPUM_2216

See Amino acid alignment / Visit BSNT_03711 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:14
# Commandline: needle
#    -asequence dna-align/BSNT_03711___yqgQ.1.24716.seq
#    -bsequence dna-align/BPUM_2216___yqgQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03711___yqgQ-BPUM_2216___yqgQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03711___yqgQ-BPUM_2216___yqgQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03711___yqgQ
# 2: BPUM_2216___yqgQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 261
# Identity:     135/261 (51.7%)
# Similarity:   135/261 (51.7%)
# Gaps:          90/261 (34.5%)
# Score: 367.0
# 
#
#=======================================

BSNT_03711___      1 ------------ATGAATACATTTTATGATGTGCAGCAGCTGTTAAAAAC     38
                                 |||||.||.||.||||||||.||||||||..|.|..|.
BPUM_2216___y      1 ATGGTGGAAACAATGAAAACGTTATATGATGTACAGCAGCTACTCATGAG     50

BSNT_03711___     39 GTTTGGCCACAT--TGTTTATTTTGGAGACAGAGAGCTTGAAATTGAGTT     86
                     .|||||  |.||  |||.|||||.|||||..|.||.||.|||.|.||.||
BPUM_2216___y     51 ATTTGG--AAATTATGTGTATTTCGGAGATCGTGAACTGGAATTAGAATT     98

BSNT_03711___     87 TATGCTGGATGAATTAAAGGAA--TTATACAT---GAACCACATGATTGA    131
                     ||||...||||||.||||||||  .|||||||   |     |||.|||||
BPUM_2216___y     99 TATGGCAGATGAACTAAAGGAAATGTATACATCGGG-----CATTATTGA    143

BSNT_03711___    132 --------AAAGG-----AGCAGTGGGCCA-GAGCGGCAGCTGTCCTTCG    167
                             ||.||     .|||.||    | ||          |.|||| 
BPUM_2216___y    144 CCGAACCGAATGGTCAAACGCAATG----ACGA----------TTCTTC-    178

BSNT_03711___    168 AAAAGAATTGGAAC-----------AAACAAAAAACGGAA-GAGATTTCT    205
                          ||.||||||           ||.|.||||||  || |.||     
BPUM_2216___y    179 -----AAATGGAACTAGCCAAATTAAATCGAAAAAC--AATGTGA-----    216

BSNT_03711___    206 ATAAAGGCTAA    216
                                
BPUM_2216___y    216 -----------    216


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