Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03706 and BPUM_2213
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:14
# Commandline: needle
# -asequence dna-align/BSNT_03706___yqgT.1.24716.seq
# -bsequence dna-align/BPUM_2213___yqgT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03706___yqgT-BPUM_2213___yqgT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03706___yqgT-BPUM_2213___yqgT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03706___yqgT
# 2: BPUM_2213___yqgT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1315
# Identity: 710/1315 (54.0%)
# Similarity: 710/1315 (54.0%)
# Gaps: 377/1315 (28.7%)
# Score: 1631.0
#
#
#=======================================
BSNT_03706___ 1 ---------ATGGCGTTTATTACGGTGAAACCTGA----------GATCA 31
|.|.||||| |.||||..||| |||.|
BPUM_2213___y 1 ATGAAGACAACGTCGTTT------GGGAAAATTGAATGGCAGCTGGATGA 44
BSNT_03706___ 32 AGA--ACAATTTGGCCAATGTGGCGAAAG-AACTGAAGATAGACGAGGAA 78
||| |.|| ||...||||||| |||| |.||...||||| ||||
BPUM_2213___y 45 AGAGGAAAA---GGATCATGTGGC-AAAGCAGCTAGGGATAG----GGAA 86
BSNT_03706___ 79 T--TGCTTAAAAGTGCA--AATCGCTCCGCACAAAAACATCAATTGTAT- 123
| .|||| |.|| .||| || ||||| ||
BPUM_2213___y 87 TGCGGCTT-----TCCATTTATC--------CA-----ATCAA----ATA 114
BSNT_03706___ 124 TGCCCTGGTTATGT-----------GATA--GA-----GGA--GCATAGC 153
.||.|||..|||.| |||| || ||| ||||
BPUM_2213___y 115 AGCACTGAGTATCTCCTTTTACCAGGATATCGACTTCCGGAAGGCAT--- 161
BSNT_03706___ 154 GGCAAAGAGCTTCAAACCATTC------------AGG------ACATAAA 185
|||||| ||| .||.|||
BPUM_2213___y 162 ----------------CCATTCATTTTCTTCCATAGGTGAGCTGCAGAAA 195
BSNT_03706___ 186 ------GCGCTTTTTACAGCCTCGGCAGCTGAAACTTTCAGATAGCTGGA 229
|||| .||||||.|| ||||| || ||.|| ||.|
BPUM_2213___y 196 TTTATTGCGC--CTTACAGGCT--GCAGC---AA---TCGGA----TGAA 231
BSNT_03706___ 230 TTGAGCAAGAGAAAATCTATG---ATGATTCAGCTGTTGAAAAGGAAATA 276
|.||.|||..| ||.||.|| |||||...||| .||.||
BPUM_2213___y 232 TGGATCAATGG--AACCTTTGAATATGATAGTGCT---------CAATTA 270
BSNT_03706___ 277 -AAGAAGA--TTA-----TTGA----TGTTTTTCCGTTTGTCTCA----- 309
||||||| |.| |||| .|..|||||.|||.| |||
BPUM_2213___y 271 GAAGAAGAGCTAAGCCGGTTGAAAGCCGCATTTCCTTTTCT-TCAAATCA 319
BSNT_03706___ 310 -TGCCGGGAAATTGGCCGTTCTGTACTCGGCAGGCCTA--TCTGGGAGCT 356
||.| ||.||.|.|||.|||||.|..|..|||| |.||..|.|.
BPUM_2213___y 320 GTGTC-----ATAGGTCATTCAGTACTTGATACACCTATTTATGAAATCC 364
BSNT_03706___ 357 GA----AGGCTGGTGGGGAGCATGCCGTAAAA----AAGGTCCATATGAA 398
|| ||.|||.| .||||| |.|.| | |.|||.||||
BPUM_2213___y 365 GAACAGAGCCTGTT---CAGCAT----TTACATTCTA---TTCATTTGAA 404
BSNT_03706___ 399 CGCGTCATTTCATGCGAATGAGTGGATTACAACGTCTGTCCTGCTAAAAT 448
.||.||.||||||||.|||||||||||.||.|||||.||..|..||||||
BPUM_2213___y 405 TGCCTCTTTTCATGCAAATGAGTGGATCACGACGTCAGTTTTAATAAAAT 454
BSNT_03706___ 449 GGTTGAAGGAATACTGTATGTCATTATGCTGCAATTCGCCTTTCTTTGGC 498
||.||| ||| |..|.||| ||| ||||||
BPUM_2213___y 455 GGATGA---AAT-CGCTTTGT--TTA-GCTGCA----------------- 480
BSNT_03706___ 499 TTTTCT---CC----------------CATAAAGCTGTTTAACAGCACAT 529
||| || |||.||||..|| ||.||
BPUM_2213___y 481 ---TCTGACCCGGTACAAGCAAGACATCATGAAGCGATT------CATAT 521
BSNT_03706___ 530 CCT--------------TATCCCTCGTTCCTCTTGTCAATCCGGATGGCG 565
.|| |.|||.||||.||..|.||||||||.|||||.|
BPUM_2213___y 522 TCTGCGAACCACGGCTCTCTCCATCGTACCCATGGTCAATCCAGATGGTG 571
BSNT_03706___ 566 TTGATCTTGTTTTAAACGGA-----TCAGAAGTCA-TGGGAGCCAGAAGA 609
|.||.||.|| ||||| .||| ||||| |.||...|||.||.
BPUM_2213___y 572 TGGACCTCGT-----ACGGAATGGTCCAG-AGTCACTAGGTCTCAGCAGT 615
BSNT_03706___ 610 GATGAGCTCGAAAGGCTAAAT-GAACATCGTCCGAATTTTA--ATGAATG 656
||.||..|...|..||||..| |||.||...|.|| ||| |.|||||
BPUM_2213___y 616 GAAGAATTTACACCGCTACTTGGAAGATATGCTGA---TTACCAAGAATG 662
BSNT_03706___ 657 GAAGGCGAATATAAACGGGGTTGATTTAAATAAACAATTTCCATCATTA- 705
|||.||.|||||||..|||||.|||||.||.||.|||||||| |..|||
BPUM_2213___y 663 GAAAGCAAATATAAGAGGGGTGGATTTGAACAATCAATTTCC-TGCTTAT 711
BSNT_03706___ 706 TGGGAAATTGAAAAATACC-----GAAAACCGACAGCACCCAG-CT-ACC 748
|||||.||.|||.|.|||| ||.| |||..||.|| | || |.|
BPUM_2213___y 712 TGGGAGATCGAATACTACCGTCATGAGA--CGAAGGCTCC--GTCTAATC 757
BSNT_03706___ 749 GCGATTTTCCGGGAATCTCT---CCGCTTACGGAGCCGGAATCTATTGCG 795
|.|.||||||.||| |.| |||||.||.|||||.|||.|.|..|||
BPUM_2213___y 758 GAGGTTTTCCTGGA---TATAAGCCGCTAACAGAGCCAGAAGCGAAAGCG 804
BSNT_03706___ 796 ATG-------TACCGGCTGATCACGGAGAATCCGC-CTGACAGACTGCTG 837
||| ||.|| |.|| |||..||| .||||.|.||..|.
BPUM_2213___y 805 ATGGCAAATCTAGCG-----TTAC---GAAAACGCTTTGACCGGCTTGTT 846
BSNT_03706___ 838 GCTCTTCATACTCAAGGAGAAGAAATTTATTGGGGCTATAAAGGCCTTGA 887
|||||.|||||.||||||||.||.||.||.|||||||.|...||.|.|||
BPUM_2213___y 847 GCTCTCCATACACAAGGAGAGGAGATATACTGGGGCTTTCTTGGTCATGA 896
BSNT_03706___ 888 GCCTGAGGAATCT-----GCTGCCGTCATAAAGGATTTTGAGGAGTTAAG 932
.|| ||..|||| |...|.||| |||.|| ||.|||.|..||||
BPUM_2213___y 897 ACC--AGCCATCTCAAAAGAAACGGTC--AAACGA-TTCGAGCAAGTAAG 941
BSNT_03706___ 933 CGGGAACATTTATAAGGGAGT--AAGGGATATAGACAGCTATGCTGGATT 980
||| .|||||...||| || .||.|.||.||||||||.||.|.
BPUM_2213___y 942 CGG------CTATAAACCAGTTCAA--TATCTTGATAGCTATGCAGGCTA 983
BSNT_03706___ 981 TCGTGATTGGTTTATTCACCATTATTTTAAGGAAGGGTATACGGTGGAAC 1030
|||.||||||||||||.|.||.|.|...||.||.||.|||||.||.||.|
BPUM_2213___y 984 TCGCGATTGGTTTATTTATCAATGTCACAATGAGGGCTATACAGTCGAGC 1033
BSNT_03706___ 1031 TTGGAAAAGGCCAAAATCCTTTGCCGTTTCAGCAGT---TTTCACA-CAT 1076
||||...|||..|||||||| |.||.||..|.| |||.||| |||
BPUM_2213___y 1034 TTGGCTTAGGAAAAAATCCT----CTTTCCATGAATCAATTTGACACCAT 1079
BSNT_03706___ 1077 ATAT----AACGCCACAAACGGCATCTTGTGG--AGGGCGTTATTTTTTC 1120
.||| || |||||..|..|.||.||| || |
BPUM_2213___y 1080 TTATGAGAAA----ACAAAGCGATTGTTATGGGAAG-------------C 1112
BSNT_03706___ 1121 ATGAGTAA------- 1128
|| ||||
BPUM_2213___y 1113 AT--GTAAGTGTTAA 1125
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