Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03706 and BPUM_2213

See Amino acid alignment / Visit BSNT_03706 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:14
# Commandline: needle
#    -asequence dna-align/BSNT_03706___yqgT.1.24716.seq
#    -bsequence dna-align/BPUM_2213___yqgT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03706___yqgT-BPUM_2213___yqgT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03706___yqgT-BPUM_2213___yqgT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03706___yqgT
# 2: BPUM_2213___yqgT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1315
# Identity:     710/1315 (54.0%)
# Similarity:   710/1315 (54.0%)
# Gaps:         377/1315 (28.7%)
# Score: 1631.0
# 
#
#=======================================

BSNT_03706___      1 ---------ATGGCGTTTATTACGGTGAAACCTGA----------GATCA     31
                              |.|.|||||      |.||||..|||          |||.|
BPUM_2213___y      1 ATGAAGACAACGTCGTTT------GGGAAAATTGAATGGCAGCTGGATGA     44

BSNT_03706___     32 AGA--ACAATTTGGCCAATGTGGCGAAAG-AACTGAAGATAGACGAGGAA     78
                     |||  |.||   ||...||||||| |||| |.||...|||||    ||||
BPUM_2213___y     45 AGAGGAAAA---GGATCATGTGGC-AAAGCAGCTAGGGATAG----GGAA     86

BSNT_03706___     79 T--TGCTTAAAAGTGCA--AATCGCTCCGCACAAAAACATCAATTGTAT-    123
                     |  .||||     |.||  .|||        ||     |||||    || 
BPUM_2213___y     87 TGCGGCTT-----TCCATTTATC--------CA-----ATCAA----ATA    114

BSNT_03706___    124 TGCCCTGGTTATGT-----------GATA--GA-----GGA--GCATAGC    153
                     .||.|||..|||.|           ||||  ||     |||  ||||   
BPUM_2213___y    115 AGCACTGAGTATCTCCTTTTACCAGGATATCGACTTCCGGAAGGCAT---    161

BSNT_03706___    154 GGCAAAGAGCTTCAAACCATTC------------AGG------ACATAAA    185
                                     ||||||            |||      .||.|||
BPUM_2213___y    162 ----------------CCATTCATTTTCTTCCATAGGTGAGCTGCAGAAA    195

BSNT_03706___    186 ------GCGCTTTTTACAGCCTCGGCAGCTGAAACTTTCAGATAGCTGGA    229
                           ||||  .||||||.||  |||||   ||   ||.||    ||.|
BPUM_2213___y    196 TTTATTGCGC--CTTACAGGCT--GCAGC---AA---TCGGA----TGAA    231

BSNT_03706___    230 TTGAGCAAGAGAAAATCTATG---ATGATTCAGCTGTTGAAAAGGAAATA    276
                     |.||.|||..|  ||.||.||   |||||...|||         .||.||
BPUM_2213___y    232 TGGATCAATGG--AACCTTTGAATATGATAGTGCT---------CAATTA    270

BSNT_03706___    277 -AAGAAGA--TTA-----TTGA----TGTTTTTCCGTTTGTCTCA-----    309
                      |||||||  |.|     ||||    .|..|||||.|||.| |||     
BPUM_2213___y    271 GAAGAAGAGCTAAGCCGGTTGAAAGCCGCATTTCCTTTTCT-TCAAATCA    319

BSNT_03706___    310 -TGCCGGGAAATTGGCCGTTCTGTACTCGGCAGGCCTA--TCTGGGAGCT    356
                      ||.|     ||.||.|.|||.|||||.|..|..||||  |.||..|.|.
BPUM_2213___y    320 GTGTC-----ATAGGTCATTCAGTACTTGATACACCTATTTATGAAATCC    364

BSNT_03706___    357 GA----AGGCTGGTGGGGAGCATGCCGTAAAA----AAGGTCCATATGAA    398
                     ||    ||.|||.|   .|||||    |.|.|    |   |.|||.||||
BPUM_2213___y    365 GAACAGAGCCTGTT---CAGCAT----TTACATTCTA---TTCATTTGAA    404

BSNT_03706___    399 CGCGTCATTTCATGCGAATGAGTGGATTACAACGTCTGTCCTGCTAAAAT    448
                     .||.||.||||||||.|||||||||||.||.|||||.||..|..||||||
BPUM_2213___y    405 TGCCTCTTTTCATGCAAATGAGTGGATCACGACGTCAGTTTTAATAAAAT    454

BSNT_03706___    449 GGTTGAAGGAATACTGTATGTCATTATGCTGCAATTCGCCTTTCTTTGGC    498
                     ||.|||   ||| |..|.|||  ||| ||||||                 
BPUM_2213___y    455 GGATGA---AAT-CGCTTTGT--TTA-GCTGCA-----------------    480

BSNT_03706___    499 TTTTCT---CC----------------CATAAAGCTGTTTAACAGCACAT    529
                        |||   ||                |||.||||..||      ||.||
BPUM_2213___y    481 ---TCTGACCCGGTACAAGCAAGACATCATGAAGCGATT------CATAT    521

BSNT_03706___    530 CCT--------------TATCCCTCGTTCCTCTTGTCAATCCGGATGGCG    565
                     .||              |.|||.||||.||..|.||||||||.|||||.|
BPUM_2213___y    522 TCTGCGAACCACGGCTCTCTCCATCGTACCCATGGTCAATCCAGATGGTG    571

BSNT_03706___    566 TTGATCTTGTTTTAAACGGA-----TCAGAAGTCA-TGGGAGCCAGAAGA    609
                     |.||.||.||     |||||     .||| ||||| |.||...|||.||.
BPUM_2213___y    572 TGGACCTCGT-----ACGGAATGGTCCAG-AGTCACTAGGTCTCAGCAGT    615

BSNT_03706___    610 GATGAGCTCGAAAGGCTAAAT-GAACATCGTCCGAATTTTA--ATGAATG    656
                     ||.||..|...|..||||..| |||.||...|.||   |||  |.|||||
BPUM_2213___y    616 GAAGAATTTACACCGCTACTTGGAAGATATGCTGA---TTACCAAGAATG    662

BSNT_03706___    657 GAAGGCGAATATAAACGGGGTTGATTTAAATAAACAATTTCCATCATTA-    705
                     |||.||.|||||||..|||||.|||||.||.||.|||||||| |..||| 
BPUM_2213___y    663 GAAAGCAAATATAAGAGGGGTGGATTTGAACAATCAATTTCC-TGCTTAT    711

BSNT_03706___    706 TGGGAAATTGAAAAATACC-----GAAAACCGACAGCACCCAG-CT-ACC    748
                     |||||.||.|||.|.||||     ||.|  |||..||.||  | || |.|
BPUM_2213___y    712 TGGGAGATCGAATACTACCGTCATGAGA--CGAAGGCTCC--GTCTAATC    757

BSNT_03706___    749 GCGATTTTCCGGGAATCTCT---CCGCTTACGGAGCCGGAATCTATTGCG    795
                     |.|.||||||.|||   |.|   |||||.||.|||||.|||.|.|..|||
BPUM_2213___y    758 GAGGTTTTCCTGGA---TATAAGCCGCTAACAGAGCCAGAAGCGAAAGCG    804

BSNT_03706___    796 ATG-------TACCGGCTGATCACGGAGAATCCGC-CTGACAGACTGCTG    837
                     |||       ||.||     |.||   |||..||| .||||.|.||..|.
BPUM_2213___y    805 ATGGCAAATCTAGCG-----TTAC---GAAAACGCTTTGACCGGCTTGTT    846

BSNT_03706___    838 GCTCTTCATACTCAAGGAGAAGAAATTTATTGGGGCTATAAAGGCCTTGA    887
                     |||||.|||||.||||||||.||.||.||.|||||||.|...||.|.|||
BPUM_2213___y    847 GCTCTCCATACACAAGGAGAGGAGATATACTGGGGCTTTCTTGGTCATGA    896

BSNT_03706___    888 GCCTGAGGAATCT-----GCTGCCGTCATAAAGGATTTTGAGGAGTTAAG    932
                     .||  ||..||||     |...|.|||  |||.|| ||.|||.|..||||
BPUM_2213___y    897 ACC--AGCCATCTCAAAAGAAACGGTC--AAACGA-TTCGAGCAAGTAAG    941

BSNT_03706___    933 CGGGAACATTTATAAGGGAGT--AAGGGATATAGACAGCTATGCTGGATT    980
                     |||      .|||||...|||  ||  .||.|.||.||||||||.||.|.
BPUM_2213___y    942 CGG------CTATAAACCAGTTCAA--TATCTTGATAGCTATGCAGGCTA    983

BSNT_03706___    981 TCGTGATTGGTTTATTCACCATTATTTTAAGGAAGGGTATACGGTGGAAC   1030
                     |||.||||||||||||.|.||.|.|...||.||.||.|||||.||.||.|
BPUM_2213___y    984 TCGCGATTGGTTTATTTATCAATGTCACAATGAGGGCTATACAGTCGAGC   1033

BSNT_03706___   1031 TTGGAAAAGGCCAAAATCCTTTGCCGTTTCAGCAGT---TTTCACA-CAT   1076
                     ||||...|||..||||||||    |.||.||..|.|   |||.||| |||
BPUM_2213___y   1034 TTGGCTTAGGAAAAAATCCT----CTTTCCATGAATCAATTTGACACCAT   1079

BSNT_03706___   1077 ATAT----AACGCCACAAACGGCATCTTGTGG--AGGGCGTTATTTTTTC   1120
                     .|||    ||    |||||..|..|.||.|||  ||             |
BPUM_2213___y   1080 TTATGAGAAA----ACAAAGCGATTGTTATGGGAAG-------------C   1112

BSNT_03706___   1121 ATGAGTAA-------   1128
                     ||  ||||       
BPUM_2213___y   1113 AT--GTAAGTGTTAA   1125


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