Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04935 and BPUM_2212
See
Amino acid alignment /
Visit
BSNT_04935 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:40
# Commandline: needle
# -asequence dna-align/BSNT_04935___yvqJ.1.24716.seq
# -bsequence dna-align/BPUM_2212___yvqJ2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04935___yvqJ-BPUM_2212___yvqJ2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04935___yvqJ-BPUM_2212___yvqJ2.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04935___yvqJ
# 2: BPUM_2212___yvqJ2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1559
# Identity: 835/1559 (53.6%)
# Similarity: 835/1559 (53.6%)
# Gaps: 394/1559 (25.3%)
# Score: 2109.0
#
#
#=======================================
BSNT_04935___ 0 -------------------------------------------------- 0
BPUM_2212___y 1 ATGAGAAAACAAAGCGATTGTTATGGGAAGCATGTAAGTGTTAAAAAGCA 50
BSNT_04935___ 0 -------------------------------------------------- 0
BPUM_2212___y 51 CCTGTCAGGTGCTTTTTTACATTTGAACATGAAGCAATTTCTTATTGTCA 100
BSNT_04935___ 1 ---------------------------------------------ATGGT 5
||.||
BPUM_2212___y 101 ATAAAAATAATGATAGGGTAATTGACGAAGGCCACCTTGTGAGCTATTGT 150
BSNT_04935___ 6 GAA-----------------------------TTTA-------------- 12
||| ||||
BPUM_2212___y 151 GAAAGGTGTGGATGTAAAAAAAAGGATATGTTTTTAGGGAGATGTCGATT 200
BSNT_04935___ 13 ATTGAAAGTG---ATAGCATCTGGAAGAGAAATTTCAATTATCTGTTTTT 59
|||| |||| |.|||.|.|||||.||.||||||..|||..|.|||.|
BPUM_2212___y 201 ATTG--AGTGCTCAAAGCCTGTGGAAAAGGAATTTCTCTTACTTATTTAT 248
BSNT_04935___ 60 CTCAAGAATAGT-CAAGATATCCGGCGATATGTTCGCATTTAATTCAATA 108
.||.|.||| || |||.|||.|.|..||||..||..|.||.||..|.||.
BPUM_2212___y 249 GTCTAAAAT-GTGCAAAATAACAGCTGATAGTTTATCTTTCAACACCATC 297
BSNT_04935___ 109 TTATGGTTTTTAAT-TTATGACGGCAAAGGTGCGATCGGCACTGCTTTAT 157
||.|||.|||||.| .|| |.|||.|||||.||.||.||.||.||.||.|
BPUM_2212___y 298 TTGTGGCTTTTAGTACTA-GGCGGAAAAGGGGCAATTGGAACAGCCTTTT 346
BSNT_04935___ 158 TGATTGCTGTCACGTTTTTGCCGGAAGCCGTTCTGGCGCCTGTGA----C 203
|.|||||.||||..|||.|.||..||||..||.|.|.|||..|.| |
BPUM_2212___y 347 TTATTGCGGTCAGCTTTGTTCCACAAGCTATTGTTGGGCCGCTAATTACC 396
BSNT_04935___ 204 GGGGCCTTTTATGAAACAG-ACCACGCTGAAATTCTGGATGTACTTTTCA 252
||..|.|||||.|.| |.|| .||||||||.|||||||..|||.|.
BPUM_2212___y 397 ----CCAATGATGAAGCCGCATCA-ACTGAAATTTTGGATGTGTTTTGCT 441
BSNT_04935___ 253 GATCTGACAAGGGCGGC---GATTGTTTTGATTATCCCTCTAT--GTCAT 297
|||.|.||.||.|..|| .|||.||.||||..|| || ||.|.
BPUM_2212___y 442 GATTTAACTAGAGGAGCAATCATTCTTGTGATCGTC-----ATCAGTTAC 486
BSNT_04935___ 298 TTTGCGGGCTTCTCTCCGCTGTGGTTT---GTCATGA-CACTTATGATTG 343
||| |.|||||| |.|||.| |||||.|.||||
BPUM_2212___y 487 TTT----------------TATGGTTTTACGCCATTAGCACTTGTTATTG 520
BSNT_04935___ 344 ------------TGCATTCAGCTACTGG-AGCTGCCTACAATCCCGCCTC 380
|.|||||.||.||||| .||| |||||.|.||.|||||
BPUM_2212___y 521 GCTGTATGCTGCTTCATTCGGCAACTGGTGGCT-CCTACGAACCGGCCTC 569
BSNT_04935___ 381 --TATCGCTTTGATTCCTCAAA--TCGTCAATGAACAGGG----CATTCA 422
||||..|| |||| |||| |.|||.|||| || |||.||
BPUM_2212___y 570 TGTATCCATT--ATTC--CAAAGCTTGTCCATGA----GGACCTCATACA 611
BSNT_04935___ 423 AAAAGCAAACGCTGTGCTGCAATCC--TCCGC---TCAAATTGTCCGGCT 467
||||||.|| |||..|.|||| ||.|| |||..|.|||.||||
BPUM_2212___y 612 AAAAGCGAA-----TGCAACCATCCAATCAGCAAGTCATGTAGTCAGGCT 656
BSNT_04935___ 468 TGGGGCTGTCACATTATGCGGCGCTTTTC----TTACGTT--TATCAGTC 511
||.|.|.||.||..|.||.||.| || ||.|||| ||..||
BPUM_2212___y 657 TGTGACGGTTACGGTTTGTGGGG----TCATGATTGCGTTTGTAGGAG-- 700
BSNT_04935___ 512 CTTCT----TATACCATGCTTATCG----CACTTGTGCTCTATTTGGTGT 553
| |||||.|||| ||| || ||...||.|||.|..|.|
BPUM_2212___y 701 ----TAGGATATACAATGC---TCGTGATCA-TTCCTCTTTATCTCTTAT 742
BSNT_04935___ 554 CGGGTTTTCTCGTTCTTTTTATTAAGTACACTGCGGTTGAATC-TCAATC 602
|.|.|||.|||||..|..||||||..|| ||||.| ..||||
BPUM_2212___y 743 CCGCTTTACTCGTAGTCATTATTACATA---------TGAAACAGAAATC 783
BSNT_04935___ 603 AGAGTCTGCGGTTGTTACA---CAGAGA--GGC--ACATATATCGG---A 642
| ||..||.| || ||.|.| ||| .|||| ||| |
BPUM_2212___y 784 A---TCATCGAT-----CAAGCCAAAAAAGGGCTATCATA---CGGAAAA 822
BSNT_04935___ 643 AGACTGAAACGCGGCTTTAGGCTCGTCAGAAAACACCAGATTTTATATCC 692
|||.|||..||.||.|||...||.||.|||||.||.||.|||||.|.|||
BPUM_2212___y 823 AGATTGATTCGAGGATTTTCACTTGTGAGAAAGCATCATATTTTGTTTCC 872
BSNT_04935___ 693 GCTCGCCATTTACTGTATCTTTATGAATTTCGCGGCTGCCCCATGGGAAG 742
..|.||.||||..|||.|.|.|..|||.||.||.||.||.||||||||||
BPUM_2212___y 873 ATTGGCGATTTTTTGTGTTTGTTCGAACTTTGCTGCCGCACCATGGGAAG 922
BSNT_04935___ 743 CGCTCTCTGCCGTATACGTTGCGGAAGATTTAAACGGAGAGCC---GATC 789
|..|.||||...|.||..|..|.||.||||||.|..|.|..|| ||||
BPUM_2212___y 923 CATTGTCTGTTATTTATTTAACAGAGGATTTACATAGTGGACCCGTGATC 972
BSNT_04935___ 790 GTTTACTCGCTGTTAAAAGCCACCACTGCCGGGGGTGCGTTTTTATTAGG 839
||.||..||.|.||||.|||.||.||....|||||.||.||..|.||
BPUM_2212___y 973 ---TATTCATTGATTAAAGTCACAACGGCACTAGGTGCATTCTTGATGGG 1019
BSNT_04935___ 840 GTTTGTGCTGGCGAAAGTCAAAGTAAACAGGTA----CGGCTTGTTATTC 885
||||||..||.|.||.||.|||||.|||.|||| |.|||..||||..
BPUM_2212___y 1020 GTTTGTTTTGACAAAGGTAAAAGTGAACCGGTATGGGCTGCTGTTTATAG 1069
BSNT_04935___ 886 GTCACTGCTGGCATTATTGAAGGATTTGCTTTCTTTATTACCGGGATGAA 935
| |||.||.|||.||||.|||.||.|.||||||||.||.||.|||||
BPUM_2212___y 1070 G----TGCCGGGATTGTTGACGGAATTTCGTTCTTTATCACAGGCATGAA 1115
BSNT_04935___ 936 CACCTTTTTGCCGCTCGTCTTTTTCGCTGCTTTTACCTTTGGTGCCGCAG 985
|.|.|||||.||.||.||.|||.|..|.||||||.|.||.||||||||..
BPUM_2212___y 1116 CGCATTTTTACCACTTGTATTTATATCAGCTTTTGCATTAGGTGCCGCCA 1165
BSNT_04935___ 986 TCAGTGCTGTTAATGTTCCTGAGTACACGATTATCCAGACGTCTGTGGAT 1035
|||||||.||.||.||.|||||..|.||.||.||.||...|||.|| .|.
BPUM_2212___y 1166 TCAGTGCAGTCAACGTGCCTGAACATACAATGATTCAATTGTCAGT-AAA 1214
BSNT_04935___ 1036 AG-TGAGGATCAGCCGCAGGTTTACGCCGTTATACATATGATCTCAAATA 1084
|| .||||||||||||||.||.||.||..||||..|||||||.||
BPUM_2212___y 1215 AGCAGAGGATCAGCCGCAAGTGTATGCAATTATCAATATGATTTC----- 1259
BSNT_04935___ 1085 TTTCGATTCCTG---CC----GGAGCTGTCATTTGCGGGTATGCCGCTA- 1126
.||| |||.|| || ||.|||.|||||.||||.|||...||.|
BPUM_2212___y 1260 CTTC--TTCATGATCCCATTAGGCGCTCTCATTGGCGGTTATATGGCAAC 1307
BSNT_04935___ 1127 ATGCTTTCGGCTCAGGAACAGTGATTGCTGCCGGCGGGATTGTCGAAATT 1176
|.|.||| ||.||.||....||.|||||.||.|||||.||..|.|||..|
BPUM_2212___y 1308 ACGATTT-GGGTCTGGCTATGTCATTGCGGCTGGCGGCATCATTGAAGCT 1356
BSNT_04935___ 1177 ATTGCGGGTATCGGAAT--CT--TGCTGTTTACAAA-ACTGGCCAAAGCA 1221
.|..|.||.|| || || ||||.||.||||| |.||| .||.|.|
BPUM_2212___y 1357 GTGTCAGGGAT----ATGCCTGCTGCTATTCACAAACATTGG-GAAGGTA 1401
BSNT_04935___ 1222 GAAAGGTCCGACCTGATTAAAGAAAGGGAAGCAAGTGTTCATCTGTAA-- 1269
||.|||||.||..|||..|.||||.|.|| ||| ..|.|||.|||
BPUM_2212___y 1402 GAGAGGTCGGATTTGACGATAGAACGAGA--CAA---ACCTTCTTTAAAT 1446
BSNT_04935___ 1269 --------- 1269
BPUM_2212___y 1447 GCAACGTGA 1455
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.