Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03695 and BPUM_2206
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:13
# Commandline: needle
# -asequence dna-align/BSNT_03695___yqhA.1.24716.seq
# -bsequence dna-align/BPUM_2206___yqhA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03695___yqhA-BPUM_2206___yqhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03695___yqhA-BPUM_2206___yqhA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03695___yqhA
# 2: BPUM_2206___yqhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 934
# Identity: 563/934 (60.3%)
# Similarity: 563/934 (60.3%)
# Gaps: 158/934 (16.9%)
# Score: 1488.5
#
#
#=======================================
BSNT_03695___ 1 -------ATGATAGCTCTTGATCAGCACTTAACAGA------GCACAAAG 37
||||.|..|| |.||||.|||...|| .|..||||
BPUM_2206___y 1 ATGAAGAATGAAAAATC----TAAGCAATTATATGAATTTATCCTAAAAG 46
BSNT_03695___ 38 AAG---ATATCA----CGCAACAATGGCTGGAAGTTTGTACGTCAAAAG- 79
||| .|.||| || ||.||||||| .||| |.|||
BPUM_2206___y 47 AAGCCCCTGTCATGACCG-AAGAATGGCT-AAAG----------ACAAGA 84
BSNT_03695___ 80 ---GCAGCTGGC----TGTATTCAGCGAAAGA----TCAGCAAAAACTAG 118
|.||..||| |.|||| |.|||.| ||||...|||| .|
BPUM_2206___y 85 ACAGAAGAAGGCTCATTATATT---CTAAACATGCTTCAGAGGAAAC-GG 130
BSNT_03695___ 119 AACAAAAGTTAAAAGACCAG----CATGAATTATTGGTGACCATCGTAGC 164
||.|.|||.|.||.||.||| ||..|.||||| ...|||||.|.|||
BPUM_2206___y 131 AAAAGAAGCTGAAGGAACAGAACACAGCATTTATT-CAAACCATTGCAGC 179
BSNT_03695___ 165 AAAATCCCTT-----------AGA-AAAGAAGACGTAGAGGATGAGCTCA 202
|| |.||| ||| ||| |||||..|..|..|.|
BPUM_2206___y 180 AA---CACTTGTGACGCTGTCAGATAAA------GTAGAAAACCATTTGA 220
BSNT_03695___ 203 ACCGGTGGTCTCTTCA-ATGCGCCAGAGACCGTGCCGTTCATGAAGTGAC 251
|...|||||||.||.| || ||||.|.||.||.||.||.||.||.||| |
BPUM_2206___y 221 AAAAGTGGTCTGTTGATAT-CGCCCGTGATCGAGCAGTGCACGAGGTG-C 268
BSNT_03695___ 252 GGTTACA-CAAAGTGTCGGCCATTTTAACACCTTCAGGCACA---TCATG 297
.||||.| .|||...|.||.||.|||||.|.||||.|.|||| || ||
BPUM_2206___y 269 CGTTATATGAAATCATTGGACAATTTAAGATCTTCCGCCACATTTTC-TG 317
BSNT_03695___ 298 TTTGAATGGATTC-AGAAATTCAGCGA--------AGCTTCTTCTCAAGA 338
||.|| ||.|| |||.|||||.|.| ||||| ||
BPUM_2206___y 318 TTCGA---GAATCGAGACATTCACCCAAGAAACAGAGCTT--------GA 356
BSNT_03695___ 339 CATCAGCATTCAGGAATTTTATGAGTGGAGCCGGATCTTGAATCAAAACA 388
..|.|.|.|.||.||..|.|.|.||||||..|.|..||| |||...||
BPUM_2206___y 357 AGTGACCTTGCAAGACGTGTGTCAGTGGAATCAGCACTT---TCACGCCA 403
BSNT_03695___ 389 ---TTGATGAGATCATCGAAGTGTTTA-CGGAAGAATATCACCAGGTGAC 434
|||||||.||.||.| ||.||||| |.|||||||||.|||..|||||
BPUM_2206___y 404 CATTTGATGATATGATTG-AGCGTTTATCAGAAGAATATGACCGTGTGAC 452
BSNT_03695___ 435 CATGATACAATTAAACGCGCAAAAAGAAATGATTAATGAATTGAGTGCGC 484
..|.|..||..|.||.||.||||.|||.||||||.|.||..|||||||.|
BPUM_2206___y 453 TCTTAGTCAGCTGAATGCACAAAGAGAGATGATTCAAGAGCTGAGTGCTC 502
BSNT_03695___ 485 CGATTATGCCGATTA-CTGATGGAATTGGGATTCTTCCGCTTGTCGGTGA 533
|..||||.|| |.|| |..|.|.|||.||||||.|.||.||..||||.||
BPUM_2206___y 503 CTGTTATTCC-AGTATCAAAGGAAATCGGGATTTTGCCACTGATCGGAGA 551
BSNT_03695___ 534 AATTGATACGCACAGAGCGAGGACGATTTTGGAGTCTGTGCTGGAGCAGT 583
|||.||||||.||.|.||.|..|..|||.||||.||.|||||.||.|||
BPUM_2206___y 552 AATCGATACGTACCGGGCCAAAATCATTCTGGAATCCGTGCTAGAACAG- 600
BSNT_03695___ 584 GCTCAGCGTTAAAG-CTCTCGT-------ATTTATTTTTAGATATTTCGG 625
|| ||.||| || |||| ||||||||.|.|||||.||.|
BPUM_2206___y 601 -----GC-TTCAAGACT-TCGTCTAACGCATTTATTTATTGATATATCTG 643
BSNT_03695___ 626 GCGTTCCTATCGTTGATACCATGGTAGCCTATCAAATTTTTAAAGTGATT 675
|.||.||..||||||||||.|||||.||.|||||..|.|||||||||.|.
BPUM_2206___y 644 GTGTACCGGTCGTTGATACGATGGTTGCTTATCAGCTGTTTAAAGTGGTG 693
BSNT_03695___ 676 GACAGCACCAAATTGCTCGGCATTGAGACGATTATTTCAGGAATCAGGCC 725
||.|||.|.||.||.||.||.||||||||||||||.|||||.||..|.||
BPUM_2206___y 694 GATAGCGCGAAGTTACTTGGAATTGAGACGATTATATCAGGGATTCGCCC 743
BSNT_03695___ 726 GGAAATTGCCCAAACTGTCGTGAAGCTGGGTCTGGATTTTTCGAATGTGA 775
.||.||.||.||||||||.|||||.||.||..|.|||||.||.||.||.|
BPUM_2206___y 744 AGAGATCGCTCAAACTGTAGTGAAACTCGGCATTGATTTCTCAAAAGTAA 793
BSNT_03695___ 776 AAACCGAGCAAAGTCTTGCTAAAGCCCTGGCCAATAAAGGGTTT------ 819
|.||.||.||.||.|||||.|||||..|.|..||.|.|||.|||
BPUM_2206___y 794 ATACTGAACACAGCCTTGCAAAAGCGTTAGAAAAAAGAGGATTTCGTATC 843
BSNT_03695___ 820 --------------AAAATAA--AAGAGTGTTGA 837
|.||.|| ||.| |||
BPUM_2206___y 844 TTTGAAGAGCAGCAACAAGAAGCAACA----TGA 873
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