Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03682 and BPUM_2202
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:13
# Commandline: needle
# -asequence dna-align/BSNT_03682___comGD.1.24716.seq
# -bsequence dna-align/BPUM_2202___comGD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03682___comGD-BPUM_2202___comGD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03682___comGD-BPUM_2202___comGD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03682___comGD
# 2: BPUM_2202___comGD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 523
# Identity: 226/523 (43.2%)
# Similarity: 226/523 (43.2%)
# Gaps: 218/523 (41.7%)
# Score: 413.5
#
#
#=======================================
BSNT_03682___ 1 TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAA--AGT 48
| |.|
BPUM_2202___c 1 --------------------------------------------ATGATT 6
BSNT_03682___ 49 TTGCTTGTGTTAAGCCTTGCCTCTATCCTCCTGATTGCCGTCTTCACCAC 98
||.||.|| |||||| ||||....|.||.|.||
BPUM_2202___c 7 TTACTGGT-------------TCTATC-----GATTCTAATGTTGATCA- 37
BSNT_03682___ 99 ACTTCCTCCTGCTTA----TGACAAT-ACAGCTGTCCGACAGGCAGCAAG 143
|| |||.||| .||..||| .|.|| |||
BPUM_2202___c 38 -------------TAGGAGTGAAAATCCCAAATGT--AATAG-----AAG 67
BSNT_03682___ 144 GCAGCTGAA----------AAATG-ATATTATGCTCACACAGCA------ 176
|| |||||| ||.|| |.||.||| |.||||.|
BPUM_2202___c 68 GC-GCTGAAGCGAAAAGACAAGTGAACATCATG---AAACAGGATTTTCA 113
BSNT_03682___ 177 ---GACTGCT--------ATTTCCCGTCAACAAAGAACA----------- 204
|.||||| |||| |||| |||.||||
BPUM_2202___c 114 ATTGGCTGCTTATACTGCATTT---GTCA--AAAAAACACGTGTGTATGT 158
BSNT_03682___ 205 AAAATTC-----------TCTTTCATAAAAAAGAAT--ATCAA------- 234
..||||| |.|.||.||..|||.||| |||||
BPUM_2202___c 159 GGAATTCCATCTGCCACATGTATCGTATCAAATAATCGATCAAAAGGATG 208
BSNT_03682___ 235 --TTAGTCATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGA--C 280
..||||||||.| ||.|| ||.|.||..||..||| |
BPUM_2202___c 209 GTGAAGTCATTGCT-------TCTTT-----TCAGCATCAAAAAGGAAGC 246
BSNT_03682___ 281 TTTCTATAGAA--CTGCTGACATT---AAAAGACCGTTTGGAATTTAATG 325
.|| || ||.|| ||||| |.||| ||.|..|.|||||||
BPUM_2202___c 247 ATT------AAGGCTTCT-ACATTTCCACAAG---GTATCTATTTTAATG 286
BSNT_03682___ 326 AGAAAGGGCACCCGAATGCA--GGCGG------AAAAATACGAGT----- 362
..||.||.||.|| |.||| ||||| .|..||.|.|.|
BPUM_2202___c 287 TTAACGGACATCC--AAGCAGCGGCGGGTCTCTTATCATTCAATTTGGCA 334
BSNT_03682___ 363 ---AAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAGGGAGCGGGA 409
|||.| |||.|..|.||..|.|||.||||.||||||.
BPUM_2202___c 335 GCCAAACG-----------TATAAGCTCACGATCTATTTAGGAAGCGGGC 373
BSNT_03682___ 410 GAGTCAATGTGGAGAGAAAATAA 432
||.||.||||..|.|..|||||.
BPUM_2202___c 374 GAATCCATGTTCAAAAGAAATAG 396
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