Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03682 and BPUM_2202

See Amino acid alignment / Visit BSNT_03682 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:13
# Commandline: needle
#    -asequence dna-align/BSNT_03682___comGD.1.24716.seq
#    -bsequence dna-align/BPUM_2202___comGD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03682___comGD-BPUM_2202___comGD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03682___comGD-BPUM_2202___comGD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03682___comGD
# 2: BPUM_2202___comGD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 523
# Identity:     226/523 (43.2%)
# Similarity:   226/523 (43.2%)
# Gaps:         218/523 (41.7%)
# Score: 413.5
# 
#
#=======================================

BSNT_03682___      1 TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAA--AGT     48
                                                                 |  |.|
BPUM_2202___c      1 --------------------------------------------ATGATT      6

BSNT_03682___     49 TTGCTTGTGTTAAGCCTTGCCTCTATCCTCCTGATTGCCGTCTTCACCAC     98
                     ||.||.||             ||||||     ||||....|.||.|.|| 
BPUM_2202___c      7 TTACTGGT-------------TCTATC-----GATTCTAATGTTGATCA-     37

BSNT_03682___     99 ACTTCCTCCTGCTTA----TGACAAT-ACAGCTGTCCGACAGGCAGCAAG    143
                                  ||    |||.||| .||..|||  .|.||     |||
BPUM_2202___c     38 -------------TAGGAGTGAAAATCCCAAATGT--AATAG-----AAG     67

BSNT_03682___    144 GCAGCTGAA----------AAATG-ATATTATGCTCACACAGCA------    176
                     || ||||||          ||.|| |.||.|||   |.||||.|      
BPUM_2202___c     68 GC-GCTGAAGCGAAAAGACAAGTGAACATCATG---AAACAGGATTTTCA    113

BSNT_03682___    177 ---GACTGCT--------ATTTCCCGTCAACAAAGAACA-----------    204
                        |.|||||        ||||   ||||  |||.||||           
BPUM_2202___c    114 ATTGGCTGCTTATACTGCATTT---GTCA--AAAAAACACGTGTGTATGT    158

BSNT_03682___    205 AAAATTC-----------TCTTTCATAAAAAAGAAT--ATCAA-------    234
                     ..|||||           |.|.||.||..|||.|||  |||||       
BPUM_2202___c    159 GGAATTCCATCTGCCACATGTATCGTATCAAATAATCGATCAAAAGGATG    208

BSNT_03682___    235 --TTAGTCATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGA--C    280
                       ..||||||||.|       ||.||     ||.|.||..||..|||  |
BPUM_2202___c    209 GTGAAGTCATTGCT-------TCTTT-----TCAGCATCAAAAAGGAAGC    246

BSNT_03682___    281 TTTCTATAGAA--CTGCTGACATT---AAAAGACCGTTTGGAATTTAATG    325
                     .||      ||  ||.|| |||||   |.|||   ||.|..|.|||||||
BPUM_2202___c    247 ATT------AAGGCTTCT-ACATTTCCACAAG---GTATCTATTTTAATG    286

BSNT_03682___    326 AGAAAGGGCACCCGAATGCA--GGCGG------AAAAATACGAGT-----    362
                     ..||.||.||.||  |.|||  |||||      .|..||.|.|.|     
BPUM_2202___c    287 TTAACGGACATCC--AAGCAGCGGCGGGTCTCTTATCATTCAATTTGGCA    334

BSNT_03682___    363 ---AAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAGGGAGCGGGA    409
                        |||.|           |||.|..|.||..|.|||.||||.||||||.
BPUM_2202___c    335 GCCAAACG-----------TATAAGCTCACGATCTATTTAGGAAGCGGGC    373

BSNT_03682___    410 GAGTCAATGTGGAGAGAAAATAA    432
                     ||.||.||||..|.|..|||||.
BPUM_2202___c    374 GAATCCATGTTCAAAAGAAATAG    396


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