Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03681 and BPUM_2201
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:13
# Commandline: needle
# -asequence dna-align/BSNT_03681___comGE.1.24716.seq
# -bsequence dna-align/BPUM_2201___comGE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03681___comGE-BPUM_2201___comGE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03681___comGE-BPUM_2201___comGE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03681___comGE
# 2: BPUM_2201___comGE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 402
# Identity: 202/402 (50.2%)
# Similarity: 202/402 (50.2%)
# Gaps: 138/402 (34.3%)
# Score: 423.5
#
#
#=======================================
BSNT_03681___ 1 ATGTGGAGAGAAAATAAAGGTTTTTCTACAATAGAAACAATGTCTGCGCT 50
||||..|.|..|||||.|||.|||..|||.||.|||||..|||.|||
BPUM_2201___c 1 ATGTTCAAAAGAAATAGAGGGTTTAGTACGATTGAAACGCTGTTTGC--- 47
BSNT_03681___ 51 AAGTC---TGTGGCTGTTTGTGCTGCTGACAGTCGTCCCCTTGTGGGACA 97
..||| |.|..||.||||| || ||.||||
BPUM_2201___c 48 TTGTCATATTTTCCTATTTGT---------AG-----CCATTGT------ 77
BSNT_03681___ 98 AGCTGAT---AGCTGATGAAAAAAT--------GG----CGGAATCACGA 132
|||.|| |||..|||||||||| || .||||..|.||
BPUM_2201___c 78 -GCTCATGCCAGCCTATGAAAAAATCATGTTAGGGAAAAAGGAAGTAAGA 126
BSNT_03681___ 133 G--AAATCGGCTATCAGATGATGAATGAGAGCATTAGCAAATATGTCATG 180
| ||| || ||| ||| |||.|||||.|..||||
BPUM_2201___c 127 GCCAAA----CT-------------TGA-AGC-TTACCAAATTTTGCATG 157
BSNT_03681___ 181 -AGTGGTGAAGGAGCCG---------CGT-CAAAAACGATT-----ACAA 214
|..|.||||.||..|| .|| |||||.| || |.||
BPUM_2201___c 158 AACAGATGAATGAATCGTTCATAGATGGTACAAAATC--TTCTGTCAAAA 205
BSNT_03681___ 215 AGAA------------CAATCATATCTATGCAATGAAGTGGG---AGGAG 249
|||| || |||||.|||.|||| |||| |.|||
BPUM_2201___c 206 AGAAGCGAGGCGACATCA--CATATGTATTCAAT----TGGGGTAAAGAG 249
BSNT_03681___ 250 GAGGGCGAATATCAAAACGTATGTATCAAAGCCACAGCTT--ATAAAGAG 297
.|||| .|.||||||| .|||.||| |.|||.||
BPUM_2201___c 250 AAGGG-------------ATGTGTATCA----TACAACTTACACAAAAAG 282
BSNT_03681___ 298 -AAATCATATTGCCTCAGCATCCTGCAGACAGAATGGCTATACGCTTCTT 346
|.|.|||| |||.| .||||..||.|| .|||.||..|
BPUM_2201___c 283 CAGACCATA-TGCTT--TCATCAGGCTGA-TGAACGGTGA---------- 318
BSNT_03681___ 347 AA 348
BPUM_2201___c 318 -- 318
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