Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03680 and BPUM_2200
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:13
# Commandline: needle
# -asequence dna-align/BSNT_03680___comGF.1.24716.seq
# -bsequence dna-align/BPUM_2200___comGF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03680___comGF-BPUM_2200___comGF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03680___comGF-BPUM_2200___comGF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03680___comGF
# 2: BPUM_2200___comGF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 530
# Identity: 247/530 (46.6%)
# Similarity: 247/530 (46.6%)
# Gaps: 226/530 (42.6%)
# Score: 457.0
#
#
#=======================================
BSNT_03680___ 1 -------------------TTGCTCATAT-CAGGATCGTTA--------G 22
||.|.|.|.| ||||.|| || |
BPUM_2200___c 1 ATGAACGGTGAACAAGGTTTTACGCTTGTCCAGGCTC--TATGGCAATTG 48
BSNT_03680___ 23 CTGCGATT----TTCCATCTGTTTT-----TGTC---------TCGACAG 54
|.||.||| |||| |.|.|||| |||| ||.||||
BPUM_2200___c 49 CAGCTATTTTTGTTCC-TTTCTTTTGGCTGTGTCCTGCTCTTTTCAACAG 97
BSNT_03680___ 55 C-AGGAA----CAT---------------GACGGTTTCACACAGCAAGAA 84
| |.||| ||| .||.|.|||.|||| ||
BPUM_2200___c 98 CTACGAAAGCTCATCCTTTTGAAGAGATGAACCGATTCTCACA-----AA 142
BSNT_03680___ 85 TGGA-TGATTTCGATAGAACAGA---TGATG-AATGA-ATGCAAGGAGTC 128
|||| || || |||||| |..|| |||.| ||| |||
BPUM_2200___c 143 TGGAGTG-----GA---AACAGACTGTCCTGCAATTAGATG-AAG----- 178
BSNT_03680___ 129 ACAGGCAGTTAAGACAGCCGAGCA----------------TG---GGAGC 159
|.||| ||||||||| || ||||
BPUM_2200___c 179 ------AATTA----AGCCGAGCAACGGCTATTCGATCGGTGCAAGGAG- 217
BSNT_03680___ 160 GT-----GTTA--------ATCTGCACCAATCTTTCCGGGC-AGGACATC 195
|| |||| ||||| |.||| |||| ||
BPUM_2200___c 218 GTAAAGCGTTAGAATATGTATCTG-ATCAA-------GGGCGAG------ 253
BSNT_03680___ 196 CGTTTCGAA---ATT------TATCATTCAATGATAAGAAAAAGAGTGGA 236
|||.| ||| |||||....|||.|..||||.|||.||||
BPUM_2200___c 254 ----TCGTAACGATTGAGCCATATCAAGAGATGCTTCGAAAGAGAATGGA 299
BSNT_03680___ 237 T--GGCAAAGGGCATGTTCCGATTTTAGATCATATTAC------TGCCAT 278
| ||| |||.|||.|||| || |||||| | |.|.
BPUM_2200___c 300 TCAGGC--AGGCCATCTTCC----TT------TATTACAAAAGGT-CAAA 336
BSNT_03680___ 279 GAAAG----CTGA----TATTGAAAATGGTGTTGTTTTGCTGAAAATTGA 320
|||.| .||| ||.|.|..||.|.|.|.|| ||.|||.|| |
BPUM_2200___c 337 GAATGTCGCGTGAGGACTAATCAGTATAGGGCTATT---CTTAAAGTT-A 382
BSNT_03680___ 321 GAG-TGA----GGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTC 365
.|| ||| || .||.||||||.||.|.|.|||| |||
BPUM_2200___c 383 CAGATGAATCTGG----TAAGGTGTATGAAGCCGTTTTT--------TTC 420
BSNT_03680___ 366 GTATTT--AGGAGGGG---------GGTGA 384
.|||.| |||||.|| .||||
BPUM_2200___c 421 ATATATAAAGGAGTGGTTCCTACATTGTGA 450
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