Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03673 and BPUM_2196
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:13
# Commandline: needle
# -asequence dna-align/BSNT_03673___yqxM.1.24716.seq
# -bsequence dna-align/BPUM_2196___yqxM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03673___yqxM-BPUM_2196___yqxM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03673___yqxM-BPUM_2196___yqxM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03673___yqxM
# 2: BPUM_2196___yqxM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity: 337/837 (40.3%)
# Similarity: 337/837 (40.3%)
# Gaps: 384/837 (45.9%)
# Score: 744.5
#
#
#=======================================
BSNT_03673___ 1 ATGTTTCGATTGTTTTACAATCAGCAAAAGGCGAAGACGAAACTGAAAGT 50
|.||||| |||
BPUM_2196___y 1 ------------------------------------ATGAAAC----AGT 10
BSNT_03673___ 51 ---TCTGCTTA-TCTTTCAGCTTTCAGTCATTTTCAGTCTGACTGCCGCA 96
|||...|| ||| |||..|.|||||| |.|||
BPUM_2196___y 11 CGCTCTTTGTACTCT------TTTGTGCCATTTT---TTTGA-------- 43
BSNT_03673___ 97 ATATGCTTACAATTTTCCGATGAT-------ACAAGCGCTGCTTTTCATG 139
.||| ||..|.||...|||| ||.|.||||.|.|||.|.|
BPUM_2196___y 44 ----TCTT-CACGTCTCTCTTGATCTCAACAACGAACGCTTCGTTTAACG 88
BSNT_03673___ 140 ATATTG-------AAACATTTGATGTCTCACTTCAAACGTGTAAAGACTT 182
||.||| |||| |||| ||| |..||||.|||.||.|.||
BPUM_2196___y 89 ATGTTGAGCACTCAAAC-TTTG-----TCA-TGAAAACATGTGAAAATTT 131
BSNT_03673___ 183 TCAGCATACAGATAAAAACTGCCA--TTATGATAAACGCTGGGATCAAAG 230
|.|.||.||||||.|..|.||.|| .|||.|.| ||||||..|||
BPUM_2196___y 132 TGAACAAACAGATCAGCATTGTCAGCCTATCAAA-----TGGGATAGAAG 176
BSNT_03673___ 231 TGATTTG---CACATATCAGATCAAAC--GGATACGAAAGGCACTGTATG 275
||||||| |.||| .|||||||| .||| .|||||.||.||.||
BPUM_2196___y 177 TGATTTGGAACTCAT---TGATCAAACAATGAT--CAAAGGAACAGTCTG 221
BSNT_03673___ 276 CTCACCTTTCGCCTTATTTGCTGTGCTCGAAAAT-ACAGGTGAGAAACTT 324
|.||||| |...|||.||..|| ||| ||
BPUM_2196___y 222 CGCACCT-------------CAAAGCTTGAGCATCACA----------TT 248
BSNT_03673___ 325 AAGAAAT------CAA----------------AGTGGAAGTGGGAGCTTC 352
||.|||| ||| |.|||||.|||||..|.|
BPUM_2196___y 249 AAAAAATAGTGGACAACCTATTGCACACTCTGAATGGAAATGGGAATTAC 298
BSNT_03673___ 353 AT-AAGCTTGAAAATGCCCGC--AAACCGTTAAAGGATGGGAACGTGATC 399
|| ||| |||||| ||..|| ||.||||||.|.|||||..|..|..|.
BPUM_2196___y 299 ATAAAG--TGAAAA-GCGAGCAGAAGCCGTTACAAGATGGTCATATTCTT 345
BSNT_03673___ 400 GAAAAAGGATTTGTCTC----CAATCAAATCGGCGATTCACTTTATAAA- 444
|||||||| ||| ||.||...|| .||||| .|.|||
BPUM_2196___y 346 GAAAAAGG------CTCTATACAGTCCCTTC----TTTCAC--AAGAAAC 383
BSNT_03673___ 445 ----ATTG-------AGACCAAGAAAAAAATGAAACCCGGCATTTATGCA 483
|.|| |||..||| .|||||.||| .||.||||||.|.
BPUM_2196___y 384 AACCACTGTCACGACAGATAAAG-CAAAAACGAA---TGGAATTTATACG 429
BSNT_03673___ 484 TTTAAAGTATATAAACCGGCAGGCT-------ACCCGGCAAACGGCAGTA 526
||||||.|.|||.|.||...|||.| |.|.| ||..||
BPUM_2196___y 430 TTTAAAATCTATTATCCTAAAGGTTTTGAAGGATCTG--AAGAGG----- 472
BSNT_03673___ 527 CATTTGAGTGGTCGGAGCCTATGACGCTTGCAAAATG-CGATGAAAAACC 575
|||||...|||||..|.||||||..|||.|||||.|| |.| |||||
BPUM_2196___y 473 CATTTATATGGTCTAAACCTATGCAGCTCGCAAAGTGTCCA-GAAAA--- 518
BSNT_03673___ 576 GACTGTCCCTAAAAAAGAAACAAAGTCGGACGTCAAAAAGGAGAATGAAA 625
.||..||.||
BPUM_2196___y 519 ---GGTATCTTAA------------------------------------- 528
BSNT_03673___ 626 CAACACAAAAGGATATACAGGAAAAAACAATGAAAGAAGAAACATCTCAA 675
BPUM_2196___y 528 -------------------------------------------------- 528
BSNT_03673___ 676 GAAGCTGTAACCAAAGAAAATGAAACTCAATCAGACCAGAAGGAAAGCGG 725
BPUM_2196___y 528 -------------------------------------------------- 528
BSNT_03673___ 726 GGAAGAGGATGAAAAAAGCAATGAAGCTGATCAGTAA 762
BPUM_2196___y 528 ------------------------------------- 528
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