Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03672 and BPUM_2195
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:12
# Commandline: needle
# -asequence dna-align/BSNT_03672___sipW.1.24716.seq
# -bsequence dna-align/BPUM_2195___sipW.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03672___sipW-BPUM_2195___sipW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03672___sipW-BPUM_2195___sipW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03672___sipW
# 2: BPUM_2195___sipW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 673
# Identity: 353/673 (52.5%)
# Similarity: 353/673 (52.5%)
# Gaps: 200/673 (29.7%)
# Score: 839.5
#
#
#=======================================
BSNT_03672___ 1 ------------ATGAAGCTGATCAGTAA-TATTTTATACGTGATCATCT 37
||||||.|| ||||.|| ||||.|.||.|||.|..|.|
BPUM_2195___s 1 ATGAAAAAATGGATGAAGATG-TCAGGAAGTATTCTGTATGTGGTGGTAT 49
BSNT_03672___ 38 TTACTCTTATTATTGTGCTGACA------CTTGTCGTGATT-TCAAC--- 77
|.||..|.||.|||| || .||||||| ||| |||.|
BPUM_2195___s 50 TCACGGTGATGATTG------CATGTATTATTGTCGT-ATTGTCATCTAG 92
BSNT_03672___ 78 -ACGTTCATCCGGGGGAGAGCCGGCTGTGTTTGGGTATACATTGAAATCA 126
||| .|.||.|||||.||.....|.||.||.|||..|||.||...|
BPUM_2195___s 93 AACG----ACAGGAGGAGATCCTCAAATTTTCGGTTATCAATTCAAGCAA 138
BSNT_03672___ 127 GTTCTGTCAGGTTCGATGGAGCCGGAGTTCAATACAGGTTCCTTAATATT 176
||..|.||.||.||.|||||.|||||.||....||.||.||..|.||..|
BPUM_2195___s 139 GTATTATCTGGCTCAATGGAACCGGAATTTTCGACTGGCTCACTCATTGT 188
BSNT_03672___ 177 GGTCAAAGAAATCGCTGATGTGA---------AAGAGCTTCAAAAAGGTG 217
.||.|||||| |||| |...||||.|||||||.|
BPUM_2195___s 189 CGTAAAAGAA---------GTGACTTCACCGGAGTCGCTTAAAAAAGGAG 229
BSNT_03672___ 218 ACGTTATTACATTT------ATGCAGGA----TGCAAATACGGCGGTCAC 257
|..|||||||.||| |.|||||| | ||.|| ||.||
BPUM_2195___s 230 ATATTATTACGTTTCAAACGAAGCAGGACCAGT-CATAT------GTGAC 272
BSNT_03672___ 258 CCACAGAATTGTTGACATAACAAAGCAAGGAGACCA---------TTTGT 298
||||.|||||||||...|.| ||.|||||| ||.|| ||||
BPUM_2195___s 273 CCACCGAATTGTTGGGGTGA-AAGGCAAGG-GATCAAATAAAGCCTTTG- 319
BSNT_03672___ 299 TATTTAAAACAAAAGGTGATAATAATGCAGCAGCTGATTCAGCGCCTGTA 348
|.||.|||||||||.|.||| .||||
BPUM_2195___s 320 ------AGACGAAAGGTGATCAGAAT-------------------ATGTA 344
BSNT_03672___ 349 TC-GGACG----------AAAATGTTCGC-------------GCGCAATA 374
|| ||||| |||| || |||||.||
BPUM_2195___s 345 TCAGGACGGCACACTAGTAAAA-----GCGGATCAGGTGACTGCGCAGTA 389
BSNT_03672___ 375 CACAGGTTTTCAGCTTCCATATGCAGGCTATATGCTTCATTT----TGCC 420
.||.|||.|..|..||||.|||||||| .|.||||| ||| ||
BPUM_2195___s 390 TACGGGTATGAACATTCCTTATGCAGG---AAAGCTTC-TTTCGTATG-- 433
BSNT_03672___ 421 AGCCAG-----CCGATTGGAACGGCTGTATTATTGATTGTTCCCGGCGTG 465
||| .||..||||||.||..|..||.|.|||.|.||.||.|||
BPUM_2195___s 434 ---CAGGAACTTCGGCTGGAACCGCGTTGCTACTCATTATACCAGGTGTG 480
BSNT_03672___ 466 ATGCTGTTAGTGTACGC---------TTTTGTGACGATCAGCAGCGCCAT 506
||||||.|.||.||..| ||||||| |.|||..||
BPUM_2195___s 481 ATGCTGCTCGTTTATTCAACTCTTCATTTTGTG-------GGAGCTGCA- 522
BSNT_03672___ 507 TAGAGAAATTGAAAGA---AAGACAAAAGCCTTGGA--AACAGAT-ACAA 550
|||.| ||||||.|.|.|| || .|||||| .||.
BPUM_2195___s 523 -----------AAACATCGAAGACACACGGCT--GATTTACAGATGTCAG 559
BSNT_03672___ 551 AGGACAGCACCATGTCTACTTAA 573
|||| ||.| .|||||
BPUM_2195___s 560 AGGA----ACAA-----GCTTAA 573
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