Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03670 and BPUM_2193

See Amino acid alignment / Visit BSNT_03670 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:12
# Commandline: needle
#    -asequence dna-align/BSNT_03670___sinR.1.24716.seq
#    -bsequence dna-align/BPUM_2193___sinR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03670___sinR-BPUM_2193___sinR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03670___sinR-BPUM_2193___sinR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03670___sinR
# 2: BPUM_2193___sinR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 342
# Identity:     302/342 (88.3%)
# Similarity:   302/342 (88.3%)
# Gaps:           6/342 ( 1.8%)
# Score: 1374.0
# 
#
#=======================================

BSNT_03670___      1 ATGACATTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTA     50
                           |||||||||||||||||||||||||||||.||.|||||||||||
BPUM_2193___s      1 ------TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTA     44

BSNT_03670___     51 CTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGCGAAGTCTTATTTAA    100
                     |||||||||||||||.||.|||||.|||||||||||||||||||||||||
BPUM_2193___s     45 CTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGCGAAGTCTTATTTAA     94

BSNT_03670___    101 GCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAA    150
                     |||||||||||.||||..|.|||||.||||||||||||||||||||.|||
BPUM_2193___s     95 GCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAA    144

BSNT_03670___    151 AAAGTCTCCGCTGTTCTGGACGTCTCGGTTCATACTTTGCTCGATGAGAA    200
                     |||||||||||||||||||||||||||||||||||..||.|..|.||.||
BPUM_2193___s    145 AAAGTCTCCGCTGTTCTGGACGTCTCGGTTCATACACTGTTACACGAAAA    194

BSNT_03670___    201 ACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAATTGG    250
                     |.||||||||||||||||||||||||||||||||||||||||.|||.|.|
BPUM_2193___s    195 AGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAACTAG    244

BSNT_03670___    251 TTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTT    300
                     ||||.|||||.||||||||.|||||.||||||||.|||||||||||||||
BPUM_2193___s    245 TTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTT    294

BSNT_03670___    301 TTAGATTATCAAAAATGGAGAAAATCCCAAAAAGAGGAGTAG    342
                     |||||||||||||..|||||||||...|||.||||||||||.
BPUM_2193___s    295 TTAGATTATCAAATCTGGAGAAAAAAGCAAGAAGAGGAGTAA    336


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