Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03666 and BPUM_2190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:12
# Commandline: needle
# -asequence dna-align/BSNT_03666___yqhH.1.24716.seq
# -bsequence dna-align/BPUM_2190___yqhH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03666___yqhH-BPUM_2190___yqhH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03666___yqhH-BPUM_2190___yqhH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03666___yqhH
# 2: BPUM_2190___yqhH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1768
# Identity: 1200/1768 (67.9%)
# Similarity: 1200/1768 (67.9%)
# Gaps: 191/1768 (10.8%)
# Score: 3864.5
#
#
#=======================================
BSNT_03666___ 1 ATGAATACAGAAATGATCTACGATGCAAAAT--GGCCTGAA--GAATTT- 45
.||||||...|||.|||.|..||| ||..|| ||| || ||||||
BPUM_2190___y 1 TTGAATATTCAAACGATTTTTGAT-CAGGATTGGGC---AAGTGAATTTC 46
BSNT_03666___ 46 ----GCTGAAAGACTGAAAAACGATGGCCCTTGGGCAAACTGGGAACTGT 91
||.|..|| |.|.| ||.|||||.|||||||||||||||.|||
BPUM_2190___y 47 AGCAGCGGCTAG-CAGCA----GACGGCCCCTGGGCAAACTGGGAAATGT 91
BSNT_03666___ 92 AC-------AAGCTCTCTGCAGAAATCCAGAAAA-CATTAGCAATTCCAG 133
|| .||| |||| |||||.|||| || .|||.||| |
BPUM_2190___y 92 ACCGTTTAGCAGC-----GCAG--ATCCAAAAAATCA-CAGCCATT---G 130
BSNT_03666___ 134 AT---TTTGAAGGCTTACGGGCTCCTTTATATCTGCCTTCCTTTACGCCG 180
|| ||||||||..|.|..||||||....||||.|||.|.||.|||||.
BPUM_2190___y 131 ATTCATTTGAAGGACTGCAAGCTCCTGCCCATCTACCTGCATTCACGCCT 180
BSNT_03666___ 181 CTCCCCCACCAGCTTGAAGTGGCGCA-AAAAGTGGTTGAAAAAATGAACG 229
.|....||.|||||||||||.|| || ||.|||.||.|||.|.|||||||
BPUM_2190___y 181 TTAAAACATCAGCTTGAAGTAGC-CAGAAGAGTCGTAGAAGAGATGAACG 229
BSNT_03666___ 230 GGAAAGCGATTTTAGCAGATGAGGTTGGTCTCGGGAAAACGGTTGAAGCT 279
|.|||||.||||||||||||||.||.||.||.||.|||||.||.|||||.
BPUM_2190___y 230 GAAAAGCCATTTTAGCAGATGAAGTGGGACTTGGAAAAACCGTAGAAGCA 279
BSNT_03666___ 280 GGACTGATTCTAAAAGAATATATGATTCGCGGGTTAGCAAAAAAAATTTT 329
|||||||||.|.||||||||.||||||||.||..|.||.|||||||||.|
BPUM_2190___y 280 GGACTGATTATCAAAGAATACATGATTCGTGGACTTGCCAAAAAAATTCT 329
BSNT_03666___ 330 GATCCTTGTGCCCGCTTCACTTGTGTCACAGTGGGTCAAAGAGCTTCAGG 379
.||.||.||.|||||.||.||.||.||.||.|||||..|.|||||.| ||
BPUM_2190___y 330 CATACTCGTCCCCGCCTCTCTCGTATCTCAATGGGTACAGGAGCTGC-GG 378
BSNT_03666___ 380 A-AAAATTT----TTGATTCCGGCTGTTGAACAAAAGAAAAGCTATGTGT 424
| ||||||| ||||| |||||.||||||||.||.|||||.||||
BPUM_2190___y 379 ACAAAATTTTACATTGAT----GCTGTCGAACAAAAAAAGAGCTACGTGT 424
BSNT_03666___ 425 GGGAGCAATGCGATATTGTCGTCTCATCAATAGACACCGCGAAGCGCTCG 474
|||||||.||.||..|.||.||.||.||.||.||.||.||.||..|...|
BPUM_2190___y 425 GGGAGCAGTGTGACGTCGTGGTTTCCTCCATTGATACAGCCAAAAGACAG 474
BSNT_03666___ 475 CCCCATCGAGAAATCGTTCTGTCTATCCCATATGATCTTGTCATTATTGA 524
||.||.|||||.|...||.|.||.||..|.||.|||.|.|||||||||||
BPUM_2190___y 475 CCGCACCGAGACACTATTTTATCCATTGCCTACGATATGGTCATTATTGA 524
BSNT_03666___ 525 TGAGGCACACAAACTGAAAAATAGCAAAACGAAGAACTATGAATTTGTCC 574
|||.|||||||||||||||||.|..||||||||.||||||||||||||..
BPUM_2190___y 525 TGAAGCACACAAACTGAAAAACAATAAAACGAAAAACTATGAATTTGTAA 574
BSNT_03666___ 575 GGAATCTCGTAAAA----AAATATTGCCTGCTTCTTACCGCGACGCCAAT 620
|.||||| ||| ||||.||||.||.|.||.||.||||||||.||
BPUM_2190___y 575 GAAATCT----AAATAAGAAATTTTGCTTGTTGCTGACAGCGACGCCTAT 620
BSNT_03666___ 621 CCAGAACCGTATCGAAGAGATTTTCAATTTGGTGTCCTTATTAAAACCCG 670
|||.||||||||.|.|||.||.||.|||.|.||.|||.|..|.||.||.|
BPUM_2190___y 621 CCAAAACCGTATTGGAGAAATATTTAATCTTGTCTCCCTTCTGAAGCCAG 670
BSNT_03666___ 671 GCCATTTAGGCAGTCAGAATCACTTTCAGGAGGAGTTCGCCAAGAA-GAA 719
|.||..||||.|.|.|..||||.|||.|.||.|..||.|||||.|| ||.
BPUM_2190___y 671 GTCACCTAGGGAATGAACATCAGTTTAAAGATGTCTTTGCCAAAAAGGAT 720
BSNT_03666___ 720 ATCCAGTTTAGAAGCGCATGAACATTTAAAAGATCTTGTGAATAAAGTCA 769
.|.||| .||||||..|||||.|.|||||||.|.||.|||||||||||.|
BPUM_2190___y 721 TTACAG-CTAGAAGACCATGACCGTTTAAAACAGCTAGTGAATAAAGTGA 769
BSNT_03666___ 770 TGATCCGTAACAGGCGGCATGATACCGGGCTGAATTGGAAACAGCGCCAT 819
||||.||||||.|..|.||.||.||.||..|..|.||||.|.|.||.|||
BPUM_2190___y 770 TGATTCGTAACCGAAGACAAGACACAGGCATCGAGTGGACAAAACGGCAT 819
BSNT_03666___ 820 GTTGAAAC-AGTGCCGATTGAATTTTCTCCATCAGAGCAGGCGCTTTATG 868
||..|||| |.|.|| |||||.||.||||||.|.||.||.||..|.||||
BPUM_2190___y 820 GTCAAAACGATTTCC-ATTGATTTCTCTCCAACGGAACAAGCATTATATG 868
BSNT_03666___ 869 ATGAAATTTCTCGTTTGAAG--GAAAG-----------TATCAATAAACC 905
|||||||.|.| ||| ||||| ||| |.|||||
BPUM_2190___y 869 ATGAAATCTGT------AAGCTGAAAGAGAACCCGTCCTAT-ACTAAAC- 910
BSNT_03666___ 906 AGCCAGCATGTTCTCGATTATGACCTTGCAAAGAGAATGCTGTTCGAGCA 955
.||||||.||.||.|||||.|||.||.|||||||||||||.|||.
BPUM_2190___y 911 -----ACATGTTTTCCATCATGACTTTGGAACGAGAATGCTGTTCAAGCC 955
BSNT_03666___ 956 GAGAAGCGGTGTATATGACGCTGAAAAAGATGCTTGATCAAAAAGAGAAA 1005
|.||.|||||.||||||||..|.|||||.|||| |..||.|.||.|||
BPUM_2190___y 956 GCGAGGCGGTCTATATGACAATTAAAAAAATGC---AGGAAGATGAAAAA 1002
BSNT_03666___ 1006 CA---------AGCACCTGCCATTGATGAGGATACGATTTCAGTTTTAAT 1046
|| |.|..||||.||.| || ||..|| ||
BPUM_2190___y 1003 CATATTCTTGGATCCTCTGCAATAG---------CG----CAAATT--AT 1037
BSNT_03666___ 1047 AGATCGAATTAATCAAGTGACA-CAAAACTCTAAAGCGCTTCAAGTTGTT 1095
.||...|||.|||.||||| || ||||||.|.||.||.|||.||||.||.
BPUM_2190___y 1038 GGAGAAAATCAATGAAGTG-CAGCAAAACACAAAGGCACTTGAAGTCGTC 1086
BSNT_03666___ 1096 GATTTGATCAAAAAGATCGACGATAAGGTCATCATTTTTACAGAATACCG 1145
.|..|.||..|..||.|..|.||.||||||||.|||||.||.||||||||
BPUM_2190___y 1087 AAGCTTATTCAGCAGTTAAATGAAAAGGTCATTATTTTCACCGAATACCG 1136
BSNT_03666___ 1146 TGCAACTCAGATTTATCTGCAGTGGTTTCTTCAGCAAAACGGCATCAGTT 1195
.||.||.||.||||||.|.||.|||||||||||||||||.||||||||.|
BPUM_2190___y 1137 CGCGACACAAATTTATTTACAATGGTTTCTTCAGCAAAATGGCATCAGCT 1186
BSNT_03666___ 1196 CTGTGCCGTTTAGAGGCGGATTTAAACGTGGGAAAAAAGACTGGATGAAG 1245
|.||.||.|||.|.|||||.||||||||.||.|||||.||.||||||||.
BPUM_2190___y 1187 CCGTTCCTTTTCGTGGCGGCTTTAAACGGGGCAAAAAGGATTGGATGAAA 1236
BSNT_03666___ 1246 GATCTTTTCCG----CGGAAAAATCCAAGTCCTTATTGCAACTGAAGCAG 1291
|||.|.||..| |||..| |||||..|.|||||.||.|||||||
BPUM_2190___y 1237 GATTTATTTAGAGAACGGGCA----CAAGTGTTAATTGCTACAGAAGCAG 1282
BSNT_03666___ 1292 GCGGTGAGGGAATTAACCTGCAATTTTGCAATCACATGATCAACTATGAC 1341
||||.||.|||||.||.||.||.|||||.|||||.||.||||||||.||.
BPUM_2190___y 1283 GCGGCGAAGGAATCAATCTTCAGTTTTGTAATCAAATCATCAACTACGAT 1332
BSNT_03666___ 1342 CTGCCATGGAATCCGATGCGACTTGAGCAAAGAATCGGAAGAATTCACAG 1391
||.||.|||||.||||||||.||.||.||..|.||.||..|.||.|||.|
BPUM_2190___y 1333 CTTCCGTGGAACCCGATGCGTCTAGAACAGCGGATTGGGCGTATCCACCG 1382
BSNT_03666___ 1392 ACTCGGGCAGGAGCGTGACGTGCACATTTATAACATGGCAACAAAACATA 1441
.||.||.||.||.||.||.||.||.|||||.||||||||||||||...||
BPUM_2190___y 1383 CCTTGGACAAGAACGGGATGTCCATATTTACAACATGGCAACAAACGGTA 1432
BSNT_03666___ 1442 CGGTGGAAGAGCATATTCTAAAGCTTTTATATGAAAAAATTCATTTGTTT 1491
|.||.||.||.||.||..||||.||||||||.|||||||||||..||||.
BPUM_2190___y 1433 CCGTTGAGGAACACATCTTAAAACTTTTATACGAAAAAATTCAACTGTTC 1482
BSNT_03666___ 1492 GAAAAAGTGGTCGGCGAACTTGATGATATTTTAACGAAAAT-----TCAA 1536
|||||.||..|.|||||.||.|||||||||||||||..||| ||||
BPUM_2190___y 1483 GAAAACGTCATTGGCGATCTAGATGATATTTTAACGCGAATCGATATCAA 1532
BSNT_03666___ 1537 --GTG----AACAATTTTGAAGAGCACCTTCATGACATT-TTGTATCACT 1579
.|| ||||| |.||.|||.|.||| ||.| |
BPUM_2190___y 1533 AGATGCCGAAACAA-----------AGCTGCATCAGATTCTTTT-----T 1566
BSNT_03666___ 1580 CAGC----AACAGAAGAAGAAATGAAAATAAAAATGGATAACTTAACCTC 1625
|||| |.||||.|..||.||||||| |.||.|||||| |
BPUM_2190___y 1567 CAGCACGAATCAGACGGTGACATGAAAA---------AGAAATTAACC-C 1606
BSNT_03666___ 1626 ATTTTTG--TCTTAT-------AA---AAAACAGCAGCCTGCT-GAAAAA 1662
| .|||| ||.||| || ||||||.| |||..| ||||||
BPUM_2190___y 1607 A-GTTTGCTTCCTATTTAACAGAAGCCAAAACACC--CCTTTTAGAAAAA 1653
BSNT_03666___ 1663 AG------AGGATCTTAG 1674
|| |||.||.||.
BPUM_2190___y 1654 AGACAGCAAGGCTCATAA 1671
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