Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03664 and BPUM_2188
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:12
# Commandline: needle
# -asequence dna-align/BSNT_03664___gcvPA.1.24716.seq
# -bsequence dna-align/BPUM_2188___gcvPA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03664___gcvPA-BPUM_2188___gcvPA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03664___gcvPA-BPUM_2188___gcvPA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03664___gcvPA
# 2: BPUM_2188___gcvPA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1378
# Identity: 998/1378 (72.4%)
# Similarity: 998/1378 (72.4%)
# Gaps: 62/1378 ( 4.5%)
# Score: 3354.5
#
#
#=======================================
BSNT_03664___ 1 ATGAAGCACCGTTATTTGCCCGC-AACAGAAAAGGATAAACAGGAGATGC 49
||||||||..|.|||||| |||| |||.||..|.|||.||.|.||.||||
BPUM_2188___g 1 ATGAAGCATAGATATTTG-CCGCAAACCGAGCAAGATCAAAAAGAAATGC 49
BSNT_03664___ 50 TTGCTACTATCGGCGTAAGCAG--CATCGATGATTTATTTGCTGATATAC 97
|.|.|...|||||||| .||| .||.|||||..|.|||.|.|||||.|
BPUM_2188___g 50 TGGATGTCATCGGCGT--TCAGTCGATTGATGAGCTTTTTTCAGATATCC 97
BSNT_03664___ 98 CGGAAAACGTCAAATATAAAAAAGAGTATCAAATCAAAAAAGCGAAATCA 147
|.|||||.||.|.||.||||..||..|||.|.||.|||..|||...|||.
BPUM_2188___g 98 CAGAAAAAGTGAGATTTAAAGGAGCATATAACATTAAACCAGCCGCATCT 147
BSNT_03664___ 148 GAAACAGAATTAACAAGAGAACTGA---CAA--AGCTGGCCTCTAAAAAT 192
||||||||..|...|||.||| |.| ||| ||||| |.||.|||
BPUM_2188___g 148 GAAACAGAGCTTGTAAGGGAA-TTATCCCAACTAGCTG----CAAAGAAT 192
BSNT_03664___ 193 TGTGATACCGTACAATACGCTTC-TTTCTTAGGAGCGGGTGTATATGACC 241
...|||||.||....||.||.|| |||||| ||.||.|||||||||||.|
BPUM_2188___g 193 AAAGATACGGTTTCCTATGCATCGTTTCTT-GGTGCCGGTGTATATGATC 241
BSNT_03664___ 242 ACTATCAGCCTGTCATTGTGGATCATGTCATTTCGCGCTCTGAGTTTTAT 291
|.||.||||||||||||||.|||||||||||.||.||||||||.||||||
BPUM_2188___g 242 ATTACCAGCCTGTCATTGTCGATCATGTCATCTCACGCTCTGAATTTTAT 291
BSNT_03664___ 292 ACCGCATATACGCCTTATCAGCCAGAGATTTCACAAGGAGAGCTCCAGGC 341
||.||.|||||.|||||||||||.||||||||.|||||.||..|.||.||
BPUM_2188___g 292 ACAGCGTATACACCTTATCAGCCGGAGATTTCGCAAGGTGAATTGCAAGC 341
BSNT_03664___ 342 TATTTTTGAATTCCAAACGATGATCTG-TGAACTGACAGGCATGGATATC 390
.||.||||||||.|||||.||||| || |||.|||||.||.||||||.|.
BPUM_2188___g 342 GATCTTTGAATTTCAAACAATGAT-TGCTGAGCTGACTGGTATGGATCTT 390
BSNT_03664___ 391 GCCAACTCCTCGATGTATGACGGCGGAACAGCCTTGGCGGAAGCAGCAAT 440
||.||||||||||||||.||.|||||.|||||.||.||.|||||.||.||
BPUM_2188___g 391 GCTAACTCCTCGATGTACGATGGCGGGACAGCATTAGCTGAAGCGGCGAT 440
BSNT_03664___ 441 GCTTGCTTCAGGCCACACGAAAAAGAAAAAAATCGTTGTGTCAAAAACCG 490
|||.|||.|.||.||.||.||||||||||||.||||||||||..||||.|
BPUM_2188___g 441 GCTAGCTGCTGGACATACAAAAAAGAAAAAAGTCGTTGTGTCTGAAACGG 490
BSNT_03664___ 491 TGCATCCTGAATCGCGAGAAGTGCTGAAAACGTACGCAAAAGGTCAGTAT 540
|.|||||||||.|..|||..|||||.|||||.|||||.|||||.|||.|.
BPUM_2188___g 491 TTCATCCTGAAGCAAGAGCCGTGCTAAAAACATACGCCAAAGGACAGCAC 540
BSNT_03664___ 541 ATTGATGTTGTTGAAGTACCCGCTGC-------GGATGGCGTTACGGATC 583
||.||.|||||||||||.| |||| |||..| ||||| |
BPUM_2188___g 541 ATAGAAGTTGTTGAAGTGC---CTGCGAAAAAAGGACAG----ACGGA-C 582
BSNT_03664___ 584 TT-GATGCATTGCGCCAAA-CCGTTTGCGAGAACACAGCCGCAGTGATCG 631
|| |..||||| .|..||| |.||.|||||..|.|||||.||.||..|.|
BPUM_2188___g 583 TTAGCGGCATT-AGAAAAAGCTGTCTGCGACGAGACAGCAGCCGTTCTTG 631
BSNT_03664___ 632 TTCAGTACCCGAATTTTTTCG--GCCGGATCGAGCCGCTAAAGGATATTG 679
|.||.||.||.||.|||||.| |.|| ||||.|||.||||.||.||.|
BPUM_2188___g 632 TGCAATATCCAAACTTTTTTGGTGTCG--TCGAACCGTTAAAAGACATCG 679
BSNT_03664___ 680 AGCCTATCGCTCATCAAGGGAAA--TCCATGTTTATTGTTTC-AGCTAAC 726
|.|||||.||.|||.||||.||| || ||||..||||.|| || |||.
BPUM_2188___g 680 AACCTATTGCACATAAAGGAAAAAGTC--TGTTCGTTGTCTCTAG-TAAT 726
BSNT_03664___ 727 CCGCTTGCGCTAGGTCTTCTCACTCCGCC-GGGCAAGTTTCAGTCTGACA 775
||||||||.||.||..|.||.||.||.|| ||..||.||..|| |.||||
BPUM_2188___g 727 CCGCTTGCACTCGGGTTACTGACGCCTCCAGGAAAACTTGGAG-CAGACA 775
BSNT_03664___ 776 TCGTCGTCGGTGATGCGCAGCCTTTCGGCATTCCTTCAGCATACGGCGGC 825
|.|||||.||||||||.|||||.||.||||||||..||||.|..|||||.
BPUM_2188___g 776 TTGTCGTTGGTGATGCACAGCCATTTGGCATTCCAGCAGCGTTTGGCGGG 825
BSNT_03664___ 826 CCGCATTGCGGCTTTTTTGCCGTTACTAAAAAATTAATGAGAAAGGTGCC 875
||.||||||||.|.||||||.||.||.|||||.||.|||.|.||.|||||
BPUM_2188___g 826 CCACATTGCGGATATTTTGCTGTGACGAAAAAGTTGATGCGCAAAGTGCC 875
BSNT_03664___ 876 GGGCCGTCTCGTCGGACAAACGGAAGACGAAAACGGAAAAAGAGGCTTTG 925
.||.|||.|.|||||.||.||.|||||||||||.||.....|.||.||||
BPUM_2188___g 876 AGGTCGTTTAGTCGGGCAGACAGAAGACGAAAATGGTGTTCGTGGGTTTG 925
BSNT_03664___ 926 TGCTTACCCTGCAAGCCAGGGAGCAGCATATCCGCCGAGATAAAGCAACA 975
|..|.|||||.|||||..|.|||||||||||.||..||||||||||.||.
BPUM_2188___g 926 TATTAACCCTTCAAGCGCGTGAGCAGCATATTCGAAGAGATAAAGCGACG 975
BSNT_03664___ 976 TCAAATATATGCTCGAACCAAGCTTTAAATGCGCTGGCAGCATCAGTGGC 1025
||.|||||.||.|||||.||.||.||||||||..|.||.||.||.||.||
BPUM_2188___g 976 TCTAATATTTGTTCGAATCAGGCATTAAATGCATTAGCCGCTTCCGTTGC 1025
BSNT_03664___ 1026 CATGACTGCTCTCGGAAAAAACGGCGTAAAAGATATAGCCCGCCAAAATC 1075
||||||.||.||||||||||..|||.|.|||||.||.|||...||||||.
BPUM_2188___g 1026 CATGACAGCACTCGGAAAAACAGGCATCAAAGACATTGCCTATCAAAATG 1075
BSNT_03664___ 1076 TCTTAAAAGCCAACTATGCAAA---GCAAGAAGCAAAAAAAGCAGGTCTT 1122
|...|||||||.|||||||.|| |||.|.||.||.|.|.|.|...|||
BPUM_2188___g 1076 TACAAAAAGCCCACTATGCGAAGACGCAGGCAGAAACATATGGACTGCTT 1125
BSNT_03664___ 1123 ACCGTTATGTTTGACGGG-CCGATATTTAATGAATTTGTCATCAAACTGG 1171
.| |.||| |.||.||| ||.|| ||.||||||||||||||||||.|..
BPUM_2188___g 1126 GC--TGATG-TAGAAGGGACCCAT-TTCAATGAATTTGTCATCAAATTAC 1171
BSNT_03664___ 1172 ATGAGCCGGTGAGAGCTGTGAACAAGCGTTTGCTGGCAAAAGGCATGATT 1221
|.||.|||||...||..||.||.||.||.||.||.|.||||||.||.||.
BPUM_2188___g 1172 AAGAACCGGTACAAGAAGTCAATAAACGATTACTTGAAAAAGGAATCATC 1221
BSNT_03664___ 1222 GGCGGATATGATCTTGGGTTGACG--TATCCGGAGCTGGACTGCCATATG 1269
|||||.||.|| |||.||..|| | ||.||.|||||..|....||.|||
BPUM_2188___g 1222 GGCGGCTACGA-CTTAGGGAGA-GACTACCCAGAGCTTCAACATCACATG 1269
BSNT_03664___ 1270 CTGATTGCTGTAACGGAGCTGAGAACAAAAGAAGAAATTGACGCACTCAT 1319
||..|.||.||.||.|||||.||||||||||||||||||||..|..||||
BPUM_2188___g 1270 CTTGTCGCCGTGACAGAGCTAAGAACAAAAGAAGAAATTGATACGTTCAT 1319
BSNT_03664___ 1320 TCAGGAATTGGGGGATCGCCATGAGTAA 1347
|.||||||||||||||||||||||.|||
BPUM_2188___g 1320 TAAGGAATTGGGGGATCGCCATGAATAA 1347
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