Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03663 and BPUM_2187
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:12
# Commandline: needle
# -asequence dna-align/BSNT_03663___gcvPB.1.24716.seq
# -bsequence dna-align/BPUM_2187___gcvPB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03663___gcvPB-BPUM_2187___gcvPB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03663___gcvPB-BPUM_2187___gcvPB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03663___gcvPB
# 2: BPUM_2187___gcvPB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1523
# Identity: 1117/1523 (73.3%)
# Similarity: 1117/1523 (73.3%)
# Gaps: 88/1523 ( 5.8%)
# Score: 4162.0
#
#
#=======================================
BSNT_03663___ 1 ---------------------------------ATGAGTAATCAGGACCA 17
||||.|||.||.||.||
BPUM_2187___g 1 TTGATACGTTCATTAAGGAATTGGGGGATCGCCATGAATAAACAAGATCA 50
BSNT_03663___ 18 GGCACTTATTTTTGAACTTTCAAGAGAAGGCCGAATCGGCTATAGTCTGC 67
|.|.||||||||||||.|.||.|.||||||..||||.||.|||||.||||
BPUM_2187___g 51 GCCGCTTATTTTTGAATTATCCAAAGAAGGAAGAATTGGTTATAGCCTGC 100
BSNT_03663___ 68 CGGAGCTCGATGTACCGGAA-ATCGAATTGGGGGA------CCTCTTGTC 110
|.||..|.||||||||.||| | ||.|| |||..|.|.
BPUM_2187___g 101 CTGATTTAGATGTACCTGAACA--------GGAGATCCCGTCCTTATTTG 142
BSNT_03663___ 111 A-GACACCTATATTCGTGACGAAGACGCAGCGCTGCCGGAGGTTTCAGAG 159
| ||.||.||.||.|||.|.||.||.||.|.|||.||.||.||.||.|||
BPUM_2187___g 143 ATGAGACGTACATCCGTCATGAGGATGCTGAGCTTCCTGAAGTATCTGAG 192
BSNT_03663___ 160 CTGGACATCATGCGCCATTATACAGCGCTGTCCAAACGCAATCACGGGGT 209
||.||.||.|||||.|||||||||||..|.||.|.|||.|||||.|||||
BPUM_2187___g 193 CTTGATATTATGCGTCATTATACAGCATTATCAAGACGTAATCATGGGGT 242
BSNT_03663___ 210 GGATTCCGGTTTTTATCCTCTCGGTTCTTGCACGATGAAATATAATCCGA 259
.||||||||.|||||||||||.||.|||||.||.||||||||||||||.|
BPUM_2187___g 243 CGATTCCGGATTTTATCCTCTTGGCTCTTGTACAATGAAATATAATCCAA 292
BSNT_03663___ 260 AAATCAATGAAAAAATCGCACGTATTCCTGGTTTTGCTGCGA-TTCATCC 308
|.||.||||||||..|.|||||..||.|.||.||.|| ||.| |.|||||
BPUM_2187___g 293 AGATTAATGAAAAGGTTGCACGCCTTGCAGGCTTCGC-GCAAGTCCATCC 341
BSNT_03663___ 309 TCTTCAGGATGAAGACACGGTGCAAGGCGCATTAGAGCTTTTATATGATT 358
.||.||.||.|.||||||.|||||.||.||||||||..|..|||||||..
BPUM_2187___g 342 ACTACAAGAGGCAGACACTGTGCAGGGAGCATTAGAATTGCTATATGACC 391
BSNT_03663___ 359 TAAGCAAGCACCTTGAAGAAATAACGGGAATGGATGAGGTTACGCTTCAG 408
||.|..|.||.||.||||||||.|||||.|||||||..||.||..|.|||
BPUM_2187___g 392 TAGGTGATCATCTGGAAGAAATCACGGGGATGGATGCTGTGACATTACAG 441
BSNT_03663___ 409 CCTGCTGCCGGAGCGCACGGCGAATGGACGGGGCTGATGATGATCCGTGC 458
||.||.||.|||||.|||||.||||||||.||.||.||||||||||||||
BPUM_2187___g 442 CCAGCGGCAGGAGCACACGGTGAATGGACAGGACTCATGATGATCCGTGC 491
BSNT_03663___ 459 CTATCATGAAGCTCGCGGGGATTTCAAGCGGACGAAGGTCATTGTCCCTG 508
.||.||||||||..|.|||||....|||||.||.||.||||||||.||.|
BPUM_2187___g 492 GTACCATGAAGCAAGAGGGGACGATAAGCGAACAAAAGTCATTGTGCCAG 541
BSNT_03663___ 509 ATTCCGCGCACGGGACGAATCCTGCATCAGCGACAGTAGCAGGCTTTGAA 558
||||.||.||.||.||.||.||.|||||.||||||||.||.||.||||||
BPUM_2187___g 542 ATTCTGCCCATGGAACAAACCCAGCATCTGCGACAGTGGCTGGATTTGAA 591
BSNT_03663___ 559 ACTGTTACGGTGAAATCGAATGAAAATGGGCTTGTTGATTTAGAGGATTT 608
||..||||.||...|||..||||.|||||||||||||||||||||||..|
BPUM_2187___g 592 ACCATTACCGTTGCATCTGATGAGAATGGGCTTGTTGATTTAGAGGACCT 641
BSNT_03663___ 609 AAAAAGAGCAGTG-----AATGAAGAAACTGCAGCTCTCATGCTGACGAA 653
|.||.||| ||.|||||||||||.|||.|.|||||||||||
BPUM_2187___g 642 -----GCGCCGTGTTGTTAACGAAGAAACTGCTGCTTTAATGCTGACGAA 686
BSNT_03663___ 654 TCCGAACACGCTCGGCTTGTTTGAGGAGCAGATTACAGAGATGGCGGAAA 703
||||||.||.||||||.|.|||||.||..|.|||..|||.|||||.||||
BPUM_2187___g 687 TCCGAATACACTCGGCCTATTTGAAGAAAATATTTTAGAAATGGCTGAAA 736
BSNT_03663___ 704 TTGTACACCAAGCGGGGGGGAAACTGTATTATGACGGCGCTAATTTAAAT 753
|.||.||....||.||.||.||.||.|||||||||||.||.||.||.|||
BPUM_2187___g 737 TCGTTCATGGTGCTGGCGGCAAGCTTTATTATGACGGAGCCAACTTGAAT 786
BSNT_03663___ 754 GCCGTTTTAAGCAAGGCGAGACCTGGAGATATGGGATTTGACGTGGTGCA 803
||.|||||.||||..||.|||||.|||||||||||.||||||||.||.||
BPUM_2187___g 787 GCTGTTTTGAGCAGAGCAAGACCGGGAGATATGGGCTTTGACGTTGTTCA 836
BSNT_03663___ 804 CCTCAACCTGCATAAAACATTCACAGGCCCTCATGGCGGCGGAGGCCCCG 853
..|.|||||.||||||||.||.|||||.||.|||||.||||||||.||.|
BPUM_2187___g 837 TTTAAACCTTCATAAAACCTTTACAGGTCCGCATGGAGGCGGAGGTCCTG 886
BSNT_03663___ 854 GCTCAGGCCCTGTCGGCGTAAAAAAAGATCTGATTCCTTATTTGCCAAAG 903
|.|||||.|||||.|||||||||||.|||.|.|||||.||.|||||||||
BPUM_2187___g 887 GTTCAGGTCCTGTAGGCGTAAAAAAGGATTTAATTCCGTACTTGCCAAAG 936
BSNT_03663___ 904 CCAGTTTTAGTTAAAAAAGAAGGGCGCTTTACGTTTGATTATGACCGCCC 953
|||||..|.||.||.||||||||.||||||...||.|||.||||.||.||
BPUM_2187___g 937 CCAGTGCTTGTGAAGAAAGAAGGCCGCTTTTATTTCGATGATGATCGACC 986
BSNT_03663___ 954 ----TCATGCGATCGGCCGTGTGAAGCCGTATTACGGCAACTTTGGCATT 999
||| ||.|||||.||||||||||..||.||.|||||.||||||
BPUM_2187___g 987 AGAATCA----ATTGGCCGCGTGAAGCCGTTCTATGGTAACTTCGGCATT 1032
BSNT_03663___ 1000 AATGTGAGAGCGTATACGTATATTCGCTCCATGGGGCCTGACGGATTAAA 1049
||.||.|||||.|||.|||||||||||||.|||||.||.||.||.|||||
BPUM_2187___g 1033 AACGTCAGAGCATATGCGTATATTCGCTCTATGGGTCCAGATGGCTTAAA 1082
BSNT_03663___ 1050 GGCTGTTACTGAGAACGCAGTGTTAAACGCCAATTATATGATGAG----- 1094
||||||.|||||.||.||.||||||||.||.||.|||||||||.|
BPUM_2187___g 1083 GGCTGTAACTGATAATGCCGTGTTAAATGCGAACTATATGATGCGCCGCT 1132
BSNT_03663___ 1095 AAAGCTCGCGCCTTATTACGATCTTCCGTTTGACCGCCATTGCAAGCATG 1144
.|||| .||.|||.||||.|.||.||||||||.||.||||||||||
BPUM_2187___g 1133 TAAGC-----ACTCATTTCGATTTGCCATTTGACCGTCACTGCAAGCATG 1177
BSNT_03663___ 1145 AATTTGTATTATCAGGGAAGCGGCAGAAAAAGCTGGGAGTGCGTACGCTT 1194
|||||||..|.|||||.||.||.||||||||..|.||.||||||||.||.
BPUM_2187___g 1178 AATTTGTCCTTTCAGGTAAACGTCAGAAAAAATTAGGTGTGCGTACACTG 1227
BSNT_03663___ 1195 GATATTGCAAAACGGCTCCTTGATTTCGGCTATCATCCGCCGACTATTTA 1244
||||||||.|||||..|.||||||||.||||||||||||||.||.||.||
BPUM_2187___g 1228 GATATTGCCAAACGATTACTTGATTTTGGCTATCATCCGCCAACGATCTA 1277
BSNT_03663___ 1245 TTTCCCGCTTAATGTTGAAGAATGCATCATGATCGAGCCGACGGAGACCG 1294
.||||||||.|||||.||.||||||||||||||.||.||.||.||.||.|
BPUM_2187___g 1278 CTTCCCGCTCAATGTAGAGGAATGCATCATGATTGAACCAACTGAAACAG 1327
BSNT_03663___ 1295 AATCAAAGGAAACACTGGACGCGTTTATTGATGCTATGATTCAAATCGCA 1344
|||||||.|||||.||.||.||.||.||.||.||.||||||||.||.||.
BPUM_2187___g 1328 AATCAAAAGAAACTCTTGATGCCTTCATCGAAGCGATGATTCAGATTGCC 1377
BSNT_03663___ 1345 AAAGAAGCGGAGGAGAATCCGGAGCTTGTTCAGGAGGCCCCGCATACAAC 1394
||||||||.||.||||||||.||..|.||.|||||.||.||||||||.||
BPUM_2187___g 1378 AAAGAAGCAGAAGAGAATCCAGAAGTGGTGCAGGAAGCGCCGCATACGAC 1427
BSNT_03663___ 1395 GATTGTAAAAAGAATGGATGAAACAAAAGCGGCGAGACACCCGGTGCTCA 1444
|.|.||.|||.|||||||.||||||||.||.|||.||.|.||.||.|||
BPUM_2187___g 1428 GGTCGTCAAACGAATGGACGAAACAAAGGCCGCGCGAAATCCAGTTCTC- 1476
BSNT_03663___ 1445 GATACGAGGCGGTAGAAAGATAA 1467
|...|.|||||||||
BPUM_2187___g 1477 --------GTTTTTGAAAGATAA 1491
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