Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03662 and BPUM_2186
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:11
# Commandline: needle
# -asequence dna-align/BSNT_03662___yqhL.1.24716.seq
# -bsequence dna-align/BPUM_2186___yqhL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03662___yqhL-BPUM_2186___yqhL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03662___yqhL-BPUM_2186___yqhL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03662___yqhL
# 2: BPUM_2186___yqhL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 413
# Identity: 293/413 (70.9%)
# Similarity: 293/413 (70.9%)
# Gaps: 58/413 (14.0%)
# Score: 1093.0
#
#
#=======================================
BSNT_03662___ 1 TTGTCTAA--------TATGATCGT--------TTTGATTATTTTTGCTG 34
||||| || ||| ||||| ||||...|.||||
BPUM_2186___y 1 TTGTC-AATGTTCAACTAT-ATCGTCCTCTCACTTTGTGGACTTTT---- 44
BSNT_03662___ 35 CGTTTATCATCTATATGATTGCTTC---------CTATGTCTATCAGCAG 75
||| |||.|| ||| |||..|.|||||||||
BPUM_2186___y 45 CGT------TCTTTA-------TTCTGTCGGCAGCTACATTTATCAGCAG 81
BSNT_03662___ 76 CGAATTATGAAAACACTTACCGAAGAAGAATTCCGCGCG-------GGTT 118
||.|||||||||||.||.||.||||.|||||| ||||
BPUM_2186___y 82 CGTATTATGAAAACGCTGACGGAAGCAGAATT-------TATTAAAGGTT 124
BSNT_03662___ 119 ACCGCAAAGCGCAGCTTATTGATGTTCGTGAGCCAAATGAGTTTGAGGGC 168
||||||||||.|||||.||||||||..|.|||||||||||||||||.|||
BPUM_2186___y 125 ACCGCAAAGCCCAGCTCATTGATGTGAGAGAGCCAAATGAGTTTGATGGC 174
BSNT_03662___ 169 GGACATATTTTAGGCGCCCGCAACATCCCGCTTTCCCAGCTGAAACAGAG 218
||||||||||||||.||..|.||||||||.|||||||||||.||||||.|
BPUM_2186___y 175 GGACATATTTTAGGGGCAAGAAACATCCCCCTTTCCCAGCTTAAACAGCG 224
BSNT_03662___ 219 AAAAAATGAGATCCGTACGGACAAGCCTGTTTACCTGTACTGCCAAAACA 268
.||||||||.||.|||.|.|||||||||||.||.||.||.||||||||||
BPUM_2186___y 225 CAAAAATGAAATTCGTCCTGACAAGCCTGTATATCTCTATTGCCAAAACA 274
BSNT_03662___ 269 GTGTCCGCAGCGGACGCGCGGCACAAACCCTGCGCAAAAACGGCTGCACT 318
.|.|..|.||||||...||.||.|||||..|.||.|||||||||||...|
BPUM_2186___y 275 ATTTGAGAAGCGGAAAAGCAGCGCAAACTTTACGTAAAAACGGCTGTCGT 324
BSNT_03662___ 319 GAGATTTACAACCTAAAAGGCGGCTTTAAAAAATGGGGCGGAAAGATTAA 368
||||||||.||..||||||||||||||||||||||||||||....||.||
BPUM_2186___y 325 GAGATTTATAATTTAAAAGGCGGCTTTAAAAAATGGGGCGGCCGCATCAA 374
BSNT_03662___ 369 AGCGAAGAAATAA 381
|.|||||||.|||
BPUM_2186___y 375 AACGAAGAACTAA 387
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