Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03656 and BPUM_2183
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:11
# Commandline: needle
# -asequence dna-align/BSNT_03656___yqhO.1.24716.seq
# -bsequence dna-align/BPUM_2183___yqhO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03656___yqhO-BPUM_2183___yqhO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03656___yqhO-BPUM_2183___yqhO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03656___yqhO
# 2: BPUM_2183___yqhO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 924
# Identity: 607/924 (65.7%)
# Similarity: 607/924 (65.7%)
# Gaps: 96/924 (10.4%)
# Score: 1780.0
#
#
#=======================================
BSNT_03656___ 1 ATGTATATTGACGGTGTTTTTTCCGGCGGAGGAGTAAAA--GGCATTGCG 48
|||.|.||.||.|||||.||.||.||.|||||..|.||| |||| ||.
BPUM_2183___y 1 ATGAAGATAGATGGTGTGTTCTCAGGTGGAGGCATTAAAGGGGCA--GCA 48
BSNT_03656___ 49 CTCGCAGGCGCTTATGAAGTGCTTGAGGAAAAAGGCT---------TCCG 89
||.||.||.||.|||||||.||||||.|..|.|||.| ||||
BPUM_2183___y 49 CTTGCGGGTGCCTATGAAGCGCTTGAAGCGAGAGGATATCAGTTTGTCCG 98
BSNT_03656___ 90 CTTTAAAAGAGTTGCGGGTACAAGCGCCGGCGCCATTATTGCCGCTTTCA 139
| .||||.||||||||.||.||.||.||.|||||..|..|||
BPUM_2183___y 99 C---------CTTGCTGGTACAAGTGCTGGAGCGATCATTGCTTCACTCA 139
BSNT_03656___ 140 TTGCGTCAGG--TTACACCAGTAAGGAAATCC---ACGCT-TTAATTGAA 183
|.||..|||| ||.|| |||.||||.||.| | ||| ||| ||.
BPUM_2183___y 140 TCGCAGCAGGCTTTTCA--AGTCAGGAGATTCGGGA-GCTGTTA---GAT 183
BSNT_03656___ 184 GAAGTGGACGGAGAGAAATTGCTGGATCA-GAGGTACTCATTTC--TCCC 230
|||.||||.|.|.|..|.|||||.|| || |||.| .|||.||| |||.
BPUM_2183___y 184 GAAATGGATGAACATCACTTGCTTGA-CAGGAGAT-GTCAATTCATTCCA 231
BSNT_03656___ 231 CTTAAAGATGCTCCAGTGGGTGTCCATCTACTGGCGTCTTGGCTTATACA 280
.||||| |||.|.|.||||.|.|||||.||||||||.||.||..|.||||
BPUM_2183___y 232 TTTAAA-ATGATTCGGTGGATCTCCATTTACTGGCGCCTCGGTCTGTACA 280
BSNT_03656___ 281 AAGGCGATACGATAGAAAAATGGATTGCTGATCTGTTAAGAGCGAAAGGC 330
||||.||...|.|.|||||||||.|..|.|||.||||.| |.|||||||
BPUM_2183___y 281 AAGGGGACCGGCTGGAAAAATGGCTGACGGATGTGTTGA-AACGAAAGG- 328
BSNT_03656___ 331 ATAAGGGT-------TTTCGGCGATTTACAGAAAGGGTCTCTGCGCCTTA 373
|||| ||| ||.|||.|..|.||||..||.|||....||.
BPUM_2183___y 329 ----GGGTCACCGTATTT-GGGGATCTCAAAAAAGATTCACTGAAAATTG 373
BSNT_03656___ 374 TTGCTTCTGATCTGACAAACGGCACCATGATTGTTTTGCCGGACGA--TT 421
||||.||||||.|.|||||.||.|..||..|.||||||||.||||| ||
BPUM_2183___y 374 TTGCCTCTGATTTAACAAATGGGAAAATCCTCGTTTTGCCAGACGACCTT 423
BSNT_03656___ 422 TGGCCCGT--TACGGGTTAAATCCCGATATGTTCCCGGTTGCCAGAGCGG 469
||.| |||||.||||||||.||....|||.|.||||||||.||..
BPUM_2183___y 424 ----CCTTCATACGGCTTAAATCCAGAGCGTTTCTCTGTTGCCAGGGCAA 469
BSNT_03656___ 470 TCAGAATGAGCTGCAGCATTCCGTATTTTTTTGAACCGATAAAATTAAAA 519
||.|.|||||.|||||..|.|||||||||||.||.||..|.|||.||||
BPUM_2183___y 470 TCCGGATGAGTTGCAGTCTGCCGTATTTTTTCGAGCCTGTCAAACTAAA- 518
BSNT_03656___ 520 ACGGAC----ACAGGCACCGCCACGGTTGTCGACGGAGGTGTGTTAAGCA 565
|.| |.|||||.....||..||||.||.|||||.|||.|.||||
BPUM_2183___y 519 ---GTCATCAAAAGGCATTTGTACCATTGTGGATGGAGGCGTGCTGAGCA 565
BSNT_03656___ 566 ATTTCCCCATCTGGCTGTTTTC--AAAGGAAAGAAAGCGCCCTGTGATCG 613
|.||.||.||.|||.|||||.| ||..||||.||| |.||..|..|||
BPUM_2183___y 566 ACTTTCCAATTTGGTTGTTTGCCGAAGAGAAAAAAA--GACCATTCGTCG 613
BSNT_03656___ 614 GTGTGACGCTTGCGCCGCGTGAAAGAGAGCGTCCGAAAAAAAATATCCGC 663
||||.||..|..|.||....||||.|||.||.||..||.|....||||||
BPUM_2183___y 614 GTGTCACATTAACCCCAAACGAAAAAGAACGCCCTCAACACTCCATCCGC 663
BSNT_03656___ 664 AACGCTTTTGAACTGTTCGGCGCCCTGTTTGAAACGATGAAGGATGCCCA 713
||.||.|||||||||||.|||||.||.||||||||||||...|.|||.||
BPUM_2183___y 664 AATGCGTTTGAACTGTTTGGCGCTCTTTTTGAAACGATGCGTGGTGCTCA 713
BSNT_03656___ 714 TGACGCAAGGCACATTGC-----ATCACGCTATGAACAAAATATCATTTT 758
|||||.||||||.||||| |.||| ||||...||.|.|||||
BPUM_2183___y 714 TGACGAAAGGCATATTGCCACAAAACAC-----GAACGTCATGTTATTTT 758
BSNT_03656___ 759 TCTCCCGGTTGATGGCGTAATGGCAACTGATTTTCATTTAA---CACAAC 805
|.|.||.||.||...|||.||.||.|||||||||||..||| ||.||.
BPUM_2183___y 759 TATTCCTGTAGAACACGTCATTGCCACTGATTTTCAGCTAATGGCAGAAA 808
BSNT_03656___ 806 AAAAAAAACTAGCCCTGATTGAGCTAGGTA-AAAGACGGACAGAGCTGTT 854
|.||||| .||.||..|.||.|||||.| |.|||.|| |.||||..||
BPUM_2183___y 809 AGAAAAA---GGCGCTCGTCGATCTAGGCAGACAGAAGG-CCGAGCAATT 854
BSNT_03656___ 855 TTT--AAAGCAGTGGACCTATTAA 876
||| ||||| |||||.|.||||
BPUM_2183___y 855 TTTAAAAAGC--TGGACATTTTAA 876
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