Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03654 and BPUM_2181

See Amino acid alignment / Visit BSNT_03654 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:11
# Commandline: needle
#    -asequence dna-align/BSNT_03654___yqhQ.1.24716.seq
#    -bsequence dna-align/BPUM_2181___yqhQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03654___yqhQ-BPUM_2181___yqhQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03654___yqhQ-BPUM_2181___yqhQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03654___yqhQ
# 2: BPUM_2181___yqhQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 999
# Identity:     685/999 (68.6%)
# Similarity:   685/999 (68.6%)
# Gaps:          84/999 ( 8.4%)
# Score: 2216.0
# 
#
#=======================================

BSNT_03654___      1 ATGTC----AAAACATAAAGTTCCGCCCGCTTACGGCGGGCAGGCTGTTG     46
                     |||||    .|||||.||    ||.||.||.||.||.|||||.||.||||
BPUM_2181___y      1 ATGTCCAATCAAACAAAA----CCTCCAGCATATGGAGGGCAAGCAGTTG     46

BSNT_03654___     47 TGGAAGGCGTTATGTTTGGCGGAAAGCATCATTACGTTACAGCCATCAGA     96
                     |.|||||.||.||||||||.||.||..|..|.||.||.|||||.||..|.
BPUM_2181___y     47 TCGAAGGTGTCATGTTTGGAGGTAAAAAGAACTATGTGACAGCGATTCGG     96

BSNT_03654___     97 AGAACGGATGGAAG--CATTGACTTTTTTAAGCTTCCCCGCAAACACAAC    144
                     .|.|.||||  .||  ||||||.|||||.|||||||||||.|....||| 
BPUM_2181___y     97 CGTAAGGAT--CAGTCCATTGAGTTTTTAAAGCTTCCCCGGACTTCCAA-    143

BSNT_03654___    145 CCGAAACTGAACATCG------TGAAAAAGATCCCGTTTTTACGGGGGAT    188
                       .|||| ||||  ||      |.||.||.|||||.|||.|..||||..|
BPUM_2181___y    144 --TAAAC-GAAC--CGCCTTTCTCAAGAAAATCCCTTTTGTCAGGGGTGT    188

BSNT_03654___    189 CGCGGCCATTATCGAAGCGAGTGCAAACGGCACAAAGCATCTGAATTTTT    238
                     .||.||..||.|.|||||.||.|||||.||||..|||||..||||.||.|
BPUM_2181___y    189 TGCTGCACTTGTTGAAGCAAGCGCAAATGGCAGCAAGCACTTGAACTTCT    238

BSNT_03654___    239 CAAGCGAACGTTACGGGCTCGATCCATCTGAAGACAAGACACTTGAGCAG    288
                     |.|||||.||.||.|...|.|||||.||.|||||..|.||.|||||..|.
BPUM_2181___y    239 CCAGCGAGCGCTATGACTTAGATCCTTCAGAAGATCATACTCTTGAAAAA    288

BSNT_03654___    289 GAAGAAAAA------AAATCCTCCGGGCTGTCTATGTATCTCAGCCTCGC    332
                     |||.|||||      ||||         |.||.|||..|.||.||.|.||
BPUM_2181___y    289 GAACAAAAAAGCTCGAAAT---------TATCCATGATTTTCGGCATTGC    329

BSNT_03654___    333 AGTTATAGGCGTCCTATCATTTTTGTTCAGTAAATTCGTATTTACATTGG    382
                     .||.||.||.||.||.||..||.|.||.||||||||.||.|||||..|.|
BPUM_2181___y    330 TGTGATCGGAGTTCTCTCTCTTCTCTTTAGTAAATTTGTCTTTACCCTAG    379

BSNT_03654___    383 TTCCAGTTTTCTTAGCGGAACTGACAAGGCCGATTTTTTCCTCGGACACG    432
                     |.||.||.||.|||||.|||||.....||||..|.||||       ||.|
BPUM_2181___y    380 TACCTGTCTTTTTAGCCGAACTTGTGCGGCCCGTCTTTT-------CAGG    422

BSNT_03654___    433 -------GCGCAAATCGCGGTTGAAAGCCTGTTTAAGTTGATTTTGCTGC    475
                            ||.||||||||.||.||||...|.|||||..||.|.||..|..
BPUM_2181___y    423 GAATTTTGCACAAATCGCAGTGGAAACATTCTTTAAACTGGTCTTATTAT    472

BSNT_03654___    476 TCGGTTACATCTATTTTTTGTCCATGACACCGCTTATTAAAAGAGTGTTT    525
                     |.||.||.||.||.|||.|.||||||||.||..|.||||||||.||.|||
BPUM_2181___y    473 TAGGCTATATTTACTTTATTTCCATGACCCCTTTAATTAAAAGGGTATTT    522

BSNT_03654___    526 CAATATCATGGAGCCGAACATAAAGTCATAAACTGTTATGAACAGAAT-T    574
                     |||||||||||.||.||||||||||||||||||||.|||||||||||| |
BPUM_2181___y    523 CAATATCATGGCGCAGAACATAAAGTCATAAACTGCTATGAACAGAATCT    572

BSNT_03654___    575 TGCCAATTACTGTGGAGAATGTCCAAAACCAATCTCGGCTTCATTACCGC    624
                     ||.| ||.||.|||||.|||||||||||.|||||.||.||||||||.||.
BPUM_2181___y    573 TGAC-ATCACAGTGGAAAATGTCCAAAAACAATCACGCCTTCATTATCGA    621

BSNT_03654___    625 TGCGG-ATCAAGCTTTATTTTATTTACGATTATTGTCGGCATGTTTGTTT    673
                     ||||| |.| ||||||||||||||.||..|.||||||||.|||||.||.|
BPUM_2181___y    622 TGCGGTAGC-AGCTTTATTTTATTCACTGTCATTGTCGGAATGTTCGTCT    670

BSNT_03654___    674 ATTTACTCGTTCCGACAGATCCGCTTTGGCTGCGTGTTATAGATCGTGTC    723
                     ||||||||||.|||||||||||..|.|||.||.|.|||.|..||||..|.
BPUM_2181___y    671 ATTTACTCGTACCGACAGATCCTTTATGGGTGAGAGTTCTGAATCGCTTG    720

BSNT_03654___    724 GCACTGATACCGGTCGTGCTTGGTATATCCTTTGAAGTTCTGCAGCTGAC    773
                     ||.||.||.||.||.||.||.||.||.||.||||||||.||.|||||.||
BPUM_2181___y    721 GCGCTCATTCCAGTTGTTCTAGGCATTTCATTTGAAGTGCTTCAGCTTAC    770

BSNT_03654___    774 AAACAAAGTGCGTGACATTCCCGGT-CTGAAATTACTTGGGTACCCGGGA    822
                     .||||||.|.||.|| |.|.||.|| ||||||.|.|||||.||.||.||.
BPUM_2181___y    771 GAACAAACTCCGAGA-AGTGCCTGTGCTGAAAGTGCTTGGCTATCCTGGC    819

BSNT_03654___    823 CTTTGGCTTCAGCTGTTAACCACAAAGGAACCTAAGGATGAACAGGTTGA    872
                     ||||||||.||..||.|.||.|||||.||||||...||.||.||.||.||
BPUM_2181___y    820 CTTTGGCTGCAATTGCTTACAACAAAAGAACCTTCTGACGATCAAGTCGA    869

BSNT_03654___    873 AGTTGCCATCGAAAGCTTTAACGAACTTC-----TCAGACTCGAAGCATT    917
                     .||.|||||.|.|||.|||||.|||||||     |.|||  .|||||   
BPUM_2181___y    870 GGTAGCCATTGCAAGTTTTAATGAACTTCTTCGTTTAGA--GGAAGC---    914

BSNT_03654___    918 GTCTGAGCAAAATCAGAAGC--------CTTCTCA-CAACGTCATCTAA    957
                     ||||   |.|||  |.||||        ||.|||| ||| ||.||||||
BPUM_2181___y    915 GTCT---CTAAA--ACAAGCGTCAGATTCTGCTCATCAA-GTGATCTAA    957


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03654 and BPUM_2181

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
