Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03639 and BPUM_2169
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:10
# Commandline: needle
# -asequence dna-align/BSNT_03639___spoIIIAG.1.24716.seq
# -bsequence dna-align/BPUM_2169___spoIIIAG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03639___spoIIIAG-BPUM_2169___spoIIIAG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03639___spoIIIAG-BPUM_2169___spoIIIAG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03639___spoIIIAG
# 2: BPUM_2169___spoIIIAG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 741
# Identity: 502/741 (67.7%)
# Similarity: 502/741 (67.7%)
# Gaps: 120/741 (16.2%)
# Score: 1709.5
#
#
#=======================================
BSNT_03639___ 1 ATGAATAAAAACGGATTATGGAATGTATTGA-AAAAGCAG-----TTTCT 44
||||||||.|| ||| .||||| | ||||||.| .||||
BPUM_2169___s 1 ATGAATAACAA-GGA--CTGGAA-------ACAAAAGCTGAAATCATTCT 40
BSNT_03639___ 45 T----CCG--GGACAAA--CGAAGGACGGCGAAAAGCCGAAGCTGACCAA 86
| ||| .||.||| .||||| |||| ||.||..|.||.||
BPUM_2169___s 41 TGCAACCGCCTGAAAAAGGTGAAGG-----GAAA--CCAAAATTAACGAA 83
BSNT_03639___ 87 ATATCATTACTTTCTATTCGTTTTTGTTC----TCGGAGTTTCCTTTATG 132
..|.||||||||.|| |.||.|.||| ||||.||.||.||.|||
BPUM_2169___s 84 GCACCATTACTTGCT----GCTTGTATTCATCATCGGCGTATCTTTCATG 129
BSNT_03639___ 133 CTTGTCAGCCAGCTGTTTT------CTTCACCTGAGAAAACTGAAAACGC 176
.|.|||||.|||.|.||.| |.||| ||.||| |||.|.||
BPUM_2169___s 130 TTAGTCAGTCAGATCTTGTCACCGCCATCA----AGCAAA--GAACAAGC 173
BSNT_03639___ 177 --------------CAAAACGATAACGGCCGTATCATCACAACATTCCGC 212
|.||| |.||| |.|.||||||.| ||
BPUM_2169___s 174 TGCTGTTCCTGCTTCTAAA--AAAAC------AACCTCACAAGA----GC 211
BSNT_03639___ 213 AGACAGCAAAGAGAAAACAGCCGAAGTGT-TTAAAGCC-------TCAAA 254
|| ||| || ||.||||| ||||
BPUM_2169___s 212 AG--------GAG--------------GTATTCAAGCCGGCATCGTCAA- 238
BSNT_03639___ 255 ATCTGATAAACCTAAAG-ACTCGATCGATGACTAT-GAAAAAGAATACGA 302
.||||.| |||| |.|||||.||.|| |.| ||..||||||||||
BPUM_2169___s 239 -----GTAAATC-AAAGAATTCGATTGAAGA-TGTGGAGCAAGAATACGA 281
BSNT_03639___ 303 AAATCAGCTGAAAGAAATCCTTGAAACAATCATTGGTGTGGACGATGTCT 352
||||||||||||||||||..|.|||||.||.|||||.||.||.|||||.|
BPUM_2169___s 282 AAATCAGCTGAAAGAAATTTTAGAAACCATTATTGGCGTTGAGGATGTAT 331
BSNT_03639___ 353 CGGTTGTCGTGAATGTAGATGCAACGTCGCTGAAAGTATACGAAAAAAAC 402
||.||||.||.||||||||.|||||.||..|.|||||.|..|||||||||
BPUM_2169___s 332 CGATTGTGGTCAATGTAGACGCAACTTCTTTAAAAGTGTTTGAAAAAAAC 381
BSNT_03639___ 403 AAATCAAACAAAAATACAACCACTGAAGAAACTGACAAAGAAGGCGGAAC 452
|||||.||.||||..|||||.||.||||||||.||.|||||||||||...
BPUM_2169___s 382 AAATCCAATAAAAGCACAACGACCGAAGAAACAGATAAAGAAGGCGGCGT 431
BSNT_03639___ 453 AAGAAGCGTTACAGACCAAACATCGGAGGAAGAAATCGTCATGATCAAAA 502
..||||.||.||.||.||||||...||.||||||||||||||.|||||||
BPUM_2169___s 432 GCGAAGTGTCACCGATCAAACAAAAGAAGAAGAAATCGTCATCATCAAAA 481
BSNT_03639___ 503 ACGGCGATAAAGAAACACCTGTCGTCGTCCAAACGAAAAAACCTGATATA 552
|.|||.||.|||||||.||.|||||.||.||||||||||||||.|||||.
BPUM_2169___s 482 ATGGCAATGAAGAAACGCCAGTCGTTGTGCAAACGAAAAAACCAGATATT 531
BSNT_03639___ 553 CGCGGTGTACTCGTTGTTGCTCAAGGAGTGGACAACGTTCAAATAAAACA 602
||.|||||.||||||||||||||||||||.|||||||||||||||||..|
BPUM_2169___s 532 CGTGGTGTTCTCGTTGTTGCTCAAGGAGTAGACAACGTTCAAATAAAGAA 581
BSNT_03639___ 603 AACCATTATCGAAGCGGTGACACGGGTCCTGGATGTTCCAAGCCACCGGG 652
||||||.||.||||||||.|||||.||.||.|||||.||.|||||..|.|
BPUM_2169___s 582 AACCATCATTGAAGCGGTTACACGAGTGCTTGATGTACCGAGCCATAGAG 631
BSNT_03639___ 653 TTGCGGTTGCCCCTAAAAAAATAAAGGAGGATTCATAA--- 690
|.||.|||||||||||||||||.|||||||||||..||
BPUM_2169___s 632 TGGCTGTTGCCCCTAAAAAAATCAAGGAGGATTCGGAATGA 672
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