Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03638 and BPUM_2168

See Amino acid alignment / Visit BSNT_03638 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:10
# Commandline: needle
#    -asequence dna-align/BSNT_03638___spoIIIAH.1.24716.seq
#    -bsequence dna-align/BPUM_2168___spoIIIAH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03638___spoIIIAH-BPUM_2168___spoIIIAH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03638___spoIIIAH-BPUM_2168___spoIIIAH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03638___spoIIIAH
# 2: BPUM_2168___spoIIIAH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 699
# Identity:     448/699 (64.1%)
# Similarity:   448/699 (64.1%)
# Gaps:         105/699 (15.0%)
# Score: 1397.5
# 
#
#=======================================

BSNT_03638___      1 ---ATGCTTAAAAAACAAACCGTTTGGCTATTAACAATGCTCAGTCTTGT     47
                        |||.|.|||||||||||.||||||||||||||.|||||.|||.|.||
BPUM_2168___s      1 ATGATGTTAAAAAAACAAACGGTTTGGCTATTAACGATGCTAAGTTTAGT     50

BSNT_03638___     48 CGTGGTGTTAAGCGTCTACTATATCATGTCGCCGGAAAGCAAAAACGCCG     97
                     .||.||.|||||.||.||||||||||||||.||..||.|..||||.||.|
BPUM_2168___s     51 TGTCGTCTTAAGTGTGTACTATATCATGTCTCCACAAGGTGAAAATGCAG    100

BSNT_03638___     98 TG-CAGATGCAAAG-TGAA---AAAAGCGCGTCTGACAGCGG-AGAGGTC    141
                     || |||..|.|.|| ||||   |||||         .|.||| |||    
BPUM_2168___s    101 TGACAGTAGAAGAGATGAAATCAAAAG---------GAACGGAAGA----    137

BSNT_03638___    142 GCAACTGAAAAAGCGCCTGCCAAGCA-AGACACGAA-GGAAAAAAGCGGT    189
                           ||||||  |.|||  ||.|| |.|.|.||| |||.|||.||   
BPUM_2168___s    138 ------GAAAAA--GACTG--AACCAGAAAAAGGAATGGACAAAGGC---    174

BSNT_03638___    190 ACAGAAACTGAAAAAG-----GAAAAGAAG----------ATGGAACAAA    224
                           ||||||||||     ||..|||||          |.|.||||||
BPUM_2168___s    175 ------ACTGAAAAAGGCGCTGATGAGAAGTCCACTGACAAAGAAACAAA    218

BSNT_03638___    225 GGG--AACGA-AAGATTCATCAGCAGACAAGGAAACATCCGCTGAAGCCA    271
                     .||  |||.| |.|||  |||          ||||||..||         
BPUM_2168___s    219 TGGTAAACAAGAGGAT--ATC----------GAAACAAGCG---------    247

BSNT_03638___    272 GTGAAAAAGGAACTGTTGTTACGGAAACAGCCGATGATGATCTGTTTACA    321
                     |||||.||||||..|.|||..|.||...|.|.||.|||||.||.||||||
BPUM_2168___s    248 GTGAAGAAGGAAAGGCTGTATCAGAGCAAACGGACGATGAGCTTTTTACA    297

BSNT_03638___    322 ACGTACCGTCTTGATTTAGAAGATGCCAGAAGCAAAGAAAGAGAAGAGCT    371
                     ||.|||.|..|.||..|.||||||....|||||||..|..|.||||||.|
BPUM_2168___s    298 ACTTACAGATTAGAGCTTGAAGATAAACGAAGCAAGCAGCGTGAAGAGTT    347

BSNT_03638___    372 GAATGCCATTGTGTCAAGCGATGATGCAACAGC-CAAGGAGAAAAGCGAA    420
                     .||.|..|||||.||.||.|||||||||||||| ||| ||.|||||||||
BPUM_2168___s    348 CAACGAAATTGTATCTAGTGATGATGCAACAGCACAA-GAAAAAAGCGAA    396

BSNT_03638___    421 GCATACGATAAAATGACGGCTCTCAGTGAAGTGGAAGGAACAGAAAAACA    470
                     ||.||.||..|||||||.||.||.|||||||..||||||||.||....||
BPUM_2168___s    397 GCGTATGACCAAATGACAGCGCTTAGTGAAGCAGAAGGAACGGAGCGTCA    446

BSNT_03638___    471 GCTTGAAACGCTGATTAAAACACAAGGTTACGAGGATGCGCTTGTTAATG    520
                     .||||||||..|.|||||||||.|||||||..|.||||||||.||.|.||
BPUM_2168___s    447 ACTTGAAACCTTAATTAAAACAAAAGGTTATAAAGATGCGCTAGTGAGTG    496

BSNT_03638___    521 CTGAAGGAGATAAAATCAATATTACAGTCAAATCAGACAAACACTCCAAA    570
                     |.||.||.||||||.|.|..||.|||||....||.||||||.|.||.||.
BPUM_2168___s    497 CAGAGGGGGATAAAGTGAGCATCACAGTTCGTTCTGACAAAAAATCAAAG    546

BSNT_03638___    571 TCGAAGGCGACAGCCATTATAGACCTTGTGGCAAAAGAAATCAAAACAAT    620
                     ||..|.|||.|.|.||||||.||..|.||..|||||||         |||
BPUM_2168___s    547 TCCCAAGCGGCCGACATTATTGATATGGTCACAAAAGA---------AAT    587

BSNT_03638___    621 GAAAG---------ATGTCGCTGTCACATTTGAACCATCCAAGTAA---    657
                     ||.||         ||||.||.|||||.|||||.||.||.||..||   
BPUM_2168___s    588 GAGAGGTCTTGATAATGTAGCAGTCACTTTTGAGCCCTCTAACGAATAA    636


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