Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03638 and BPUM_2168
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:10
# Commandline: needle
# -asequence dna-align/BSNT_03638___spoIIIAH.1.24716.seq
# -bsequence dna-align/BPUM_2168___spoIIIAH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03638___spoIIIAH-BPUM_2168___spoIIIAH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03638___spoIIIAH-BPUM_2168___spoIIIAH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03638___spoIIIAH
# 2: BPUM_2168___spoIIIAH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 699
# Identity: 448/699 (64.1%)
# Similarity: 448/699 (64.1%)
# Gaps: 105/699 (15.0%)
# Score: 1397.5
#
#
#=======================================
BSNT_03638___ 1 ---ATGCTTAAAAAACAAACCGTTTGGCTATTAACAATGCTCAGTCTTGT 47
|||.|.|||||||||||.||||||||||||||.|||||.|||.|.||
BPUM_2168___s 1 ATGATGTTAAAAAAACAAACGGTTTGGCTATTAACGATGCTAAGTTTAGT 50
BSNT_03638___ 48 CGTGGTGTTAAGCGTCTACTATATCATGTCGCCGGAAAGCAAAAACGCCG 97
.||.||.|||||.||.||||||||||||||.||..||.|..||||.||.|
BPUM_2168___s 51 TGTCGTCTTAAGTGTGTACTATATCATGTCTCCACAAGGTGAAAATGCAG 100
BSNT_03638___ 98 TG-CAGATGCAAAG-TGAA---AAAAGCGCGTCTGACAGCGG-AGAGGTC 141
|| |||..|.|.|| |||| ||||| .|.||| |||
BPUM_2168___s 101 TGACAGTAGAAGAGATGAAATCAAAAG---------GAACGGAAGA---- 137
BSNT_03638___ 142 GCAACTGAAAAAGCGCCTGCCAAGCA-AGACACGAA-GGAAAAAAGCGGT 189
|||||| |.||| ||.|| |.|.|.||| |||.|||.||
BPUM_2168___s 138 ------GAAAAA--GACTG--AACCAGAAAAAGGAATGGACAAAGGC--- 174
BSNT_03638___ 190 ACAGAAACTGAAAAAG-----GAAAAGAAG----------ATGGAACAAA 224
|||||||||| ||..||||| |.|.||||||
BPUM_2168___s 175 ------ACTGAAAAAGGCGCTGATGAGAAGTCCACTGACAAAGAAACAAA 218
BSNT_03638___ 225 GGG--AACGA-AAGATTCATCAGCAGACAAGGAAACATCCGCTGAAGCCA 271
.|| |||.| |.||| ||| ||||||..||
BPUM_2168___s 219 TGGTAAACAAGAGGAT--ATC----------GAAACAAGCG--------- 247
BSNT_03638___ 272 GTGAAAAAGGAACTGTTGTTACGGAAACAGCCGATGATGATCTGTTTACA 321
|||||.||||||..|.|||..|.||...|.|.||.|||||.||.||||||
BPUM_2168___s 248 GTGAAGAAGGAAAGGCTGTATCAGAGCAAACGGACGATGAGCTTTTTACA 297
BSNT_03638___ 322 ACGTACCGTCTTGATTTAGAAGATGCCAGAAGCAAAGAAAGAGAAGAGCT 371
||.|||.|..|.||..|.||||||....|||||||..|..|.||||||.|
BPUM_2168___s 298 ACTTACAGATTAGAGCTTGAAGATAAACGAAGCAAGCAGCGTGAAGAGTT 347
BSNT_03638___ 372 GAATGCCATTGTGTCAAGCGATGATGCAACAGC-CAAGGAGAAAAGCGAA 420
.||.|..|||||.||.||.|||||||||||||| ||| ||.|||||||||
BPUM_2168___s 348 CAACGAAATTGTATCTAGTGATGATGCAACAGCACAA-GAAAAAAGCGAA 396
BSNT_03638___ 421 GCATACGATAAAATGACGGCTCTCAGTGAAGTGGAAGGAACAGAAAAACA 470
||.||.||..|||||||.||.||.|||||||..||||||||.||....||
BPUM_2168___s 397 GCGTATGACCAAATGACAGCGCTTAGTGAAGCAGAAGGAACGGAGCGTCA 446
BSNT_03638___ 471 GCTTGAAACGCTGATTAAAACACAAGGTTACGAGGATGCGCTTGTTAATG 520
.||||||||..|.|||||||||.|||||||..|.||||||||.||.|.||
BPUM_2168___s 447 ACTTGAAACCTTAATTAAAACAAAAGGTTATAAAGATGCGCTAGTGAGTG 496
BSNT_03638___ 521 CTGAAGGAGATAAAATCAATATTACAGTCAAATCAGACAAACACTCCAAA 570
|.||.||.||||||.|.|..||.|||||....||.||||||.|.||.||.
BPUM_2168___s 497 CAGAGGGGGATAAAGTGAGCATCACAGTTCGTTCTGACAAAAAATCAAAG 546
BSNT_03638___ 571 TCGAAGGCGACAGCCATTATAGACCTTGTGGCAAAAGAAATCAAAACAAT 620
||..|.|||.|.|.||||||.||..|.||..||||||| |||
BPUM_2168___s 547 TCCCAAGCGGCCGACATTATTGATATGGTCACAAAAGA---------AAT 587
BSNT_03638___ 621 GAAAG---------ATGTCGCTGTCACATTTGAACCATCCAAGTAA--- 657
||.|| ||||.||.|||||.|||||.||.||.||..||
BPUM_2168___s 588 GAGAGGTCTTGATAATGTAGCAGTCACTTTTGAGCCCTCTAACGAATAA 636
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