Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03588 and BPUM_2149
See
Amino acid alignment /
Visit
BSNT_03588 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:07
# Commandline: needle
# -asequence dna-align/BSNT_03588___bkdR.1.24716.seq
# -bsequence dna-align/BPUM_2149___rocR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03588___bkdR-BPUM_2149___rocR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03588___bkdR-BPUM_2149___rocR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03588___bkdR
# 2: BPUM_2149___rocR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2159
# Identity: 1497/2159 (69.3%)
# Similarity: 1497/2159 (69.3%)
# Gaps: 166/2159 ( 7.7%)
# Score: 4943.0
#
#
#=======================================
BSNT_03588___ 1 ATGCAAAAGGTACTGATAGTAGGTGCCGGCAAAAGG--GGAACGGCGTTA 48
|||||.|..||..||||.||.|||||.|| |.||| |||.|.||.|||
BPUM_2149___r 1 ATGCAGAGAGTCTTGATTGTCGGTGCAGG--ACAGGGTGGATCAGCATTA 48
BSNT_03588___ 49 TT----ACATATTCTGATTAAAACAGCCATCATAGATATCATTGCCGTAG 94
.| |||| ||.|.||||||...||.||..|.|||.||||..|.|
BPUM_2149___r 49 CTTGAAACAT----TGCTGAAAACAAATATGATTCAAATCGTTGCAATCG 94
BSNT_03588___ 95 TTGACAAAGACCCCGAGGCGCCGGGATTGAAAGAAGCAGAACAGTATGGG 144
..|||...||.|..|.|||.|||||..||..||||||..||.||.||||.
BPUM_2149___r 95 CCGACCTTGATCTTGGGGCACCGGGGATGGTAGAAGCGAAAAAGAATGGA 144
BSNT_03588___ 145 ATTGCCGTAT----CATCTGATTGGAAACCTTACATACAACAAAAACCGG 190
|||| || ||.|.|||||||||...||||||.||.|..|....|
BPUM_2149___r 145 ATTG----ATACGACAACGGATTGGAAAGAATACATAAAAGATGACATTG 190
BSNT_03588___ 191 ATATCGTCATTCATACTACCGGC-GATCAAGCCGTGTTTGACGAGCTCCT 239
|||||.||||..|.||.||.||| |.|| ||| |||| ||
BPUM_2149___r 191 ATATCATCATCGAAACAACGGGCAGTTC-AGC--TGTT----------CT 227
BSNT_03588___ 240 TCAAAGAAAGCAT-GAAGA---------------TACCATTGT--CATG- 270
| ||||||...|| ||||| |..|||||| ||.|
BPUM_2149___r 228 T-AAAGAACTGATGGAAGAAAAAACAGAGCAGTCTGTCATTGTTCCAAGT 276
BSNT_03588___ 271 CCGGGAAAAATGGCATACATCGTTTTTCAG--CTGATGGAAGAAAAGCAG 318
.|| |||||.|||.|| .|.|||| .|.|||..|||||||||.
BPUM_2149___r 277 TCG------ATGGCTTACGTC--ATATCAGAATTAATGTCAGAAAAGCAT 318
BSNT_03588___ 319 CACCTGATTCAAATGCTAAAAGAGCAAACCTATAAATATGACAGAATTTT 368
||.||.||||||||..|||||||.||||||||||||.|||||.|.|||||
BPUM_2149___r 319 CAGCTCATTCAAATATTAAAAGAACAAACCTATAAACATGACCGCATTTT 368
BSNT_03588___ 369 TAATTCCACCCATGATGGAATGATTTTTATTGATATCAATGAAGAAATCA 418
||||.|.||..|.|||||.|||||||||||..||||..||||||||.||.
BPUM_2149___r 369 TAATGCAACGAACGATGGCATGATTTTTATCAATATGGATGAAGAAGTCG 418
BSNT_03588___ 419 TTCTCTTTAA-CCATATGGCCGAAAAAATGGTCGG------GAAAAAACG 461
||||.||||| |.|| .|||.|..||||||||.|| |.|||||
BPUM_2149___r 419 TTCTGTTTAATCGAT-CGGCTGCCAAAATGGTTGGACGTTCGCAAAAA-- 465
BSNT_03588___ 462 TGAGGAAGTCATTGGGCGCCCAATAAAAGAAGTGATTCCGAGCACGAAGA 511
||.|..|||||.||.|..|||...||||||||.||.|..|| ||.|
BPUM_2149___r 466 ----GATGCGATTGGCCGGCACATACGTGAAGTGATCCCTAATAC-AAAA 510
BSNT_03588___ 512 TGCCGCG-GATTTTAAAAACAAGAGTGCCTGAAT----------ACAA-- 548
..||.|| .|||||||...|.||.|.|||.|||| ||||
BPUM_2149___r 511 CTCCCCGATATTTTAAGGTCGAGGGAGCCAGAATTTCATCAAAAACAATT 560
BSNT_03588___ 549 CCAGAAGCAGCTGTTAGGCGATCATTTGCAAATTGTGACCACAAGGCTGC 598
.|.|||.||| ||..|.||||||||.||.||..|..|||
BPUM_2149___r 561 TCTGAATCAG------------CAAATACAAATTGTTACAACGCGTTTGC 598
BSNT_03588___ 599 CGATTATTGATGAAGGCGGACGTCTGCTCGGGGCTCTTTGTGTTTTTAAA 648
||||.||||||||.|..|||.|..||||.||.|||||.|...||||||||
BPUM_2149___r 599 CGATAATTGATGATGCAGGAAGAATGCTAGGCGCTCTATCCATTTTTAAA 648
BSNT_03588___ 649 GATATCACTGATGCGGTCGAGCTGGCAGAGGAAGTGACCAA-CTTAAAGC 697
|||||.||.|||||.||.||.||.|||||.|||||.||.|| ||.||||
BPUM_2149___r 649 GATATTACAGATGCAGTGGAACTTGCAGAAGAAGTCACAAACCTCAAAG- 697
BSNT_03588___ 698 AGGTCCGTACGATGCTGGAGGCAATTATTCAATCCTCCGATGAGGCGATT 747
|.||.||.||||||||.|||||.||.||||||||.||.|||||.|||||.
BPUM_2149___r 698 AAGTGCGCACGATGCTCGAGGCTATCATTCAATCATCAGATGAAGCGATA 747
BSNT_03588___ 748 TCTGTCGTTGATGAAAACGGCATCGGCCTGCTAATCAATAAAGCGTATAC 797
||.|||||.|||||..|.||.|..||..|..|||||||...|||.|||||
BPUM_2149___r 748 TCCGTCGTAGATGAGCAGGGGAAAGGGATTTTAATCAACCGAGCTTATAC 797
BSNT_03588___ 798 GAAAATGACGGGGCTTTCTGAAAAAGAAGTCATCGGCAAGCCTGCAAACA 847
||||||||||||..|..|.||.|||||.||..|.|||||.|||||.....
BPUM_2149___r 798 GAAAATGACGGGATTAACAGACAAAGAGGTTGTGGGCAAACCTGCGGGTG 847
BSNT_03588___ 848 CTGATATTTCCGAAGGCGAAAGCATGCATTTAAAGGTGCTTGAAACAAGA 897
|.||||||||.|||||.|||||.||||||||.||||||||||||||||||
BPUM_2149___r 848 CGGATATTTCTGAAGGGGAAAGTATGCATTTGAAGGTGCTTGAAACAAGA 897
BSNT_03588___ 898 CGTCCTGTCCGCGGTGTCAGAATGAAGGTCGGCCCGAATGAAAAAGAAGT 947
.|.||.||.||.||.|||||||||||.|||||.||.|||.|.||.||.||
BPUM_2149___r 898 AGACCAGTTCGAGGCGTCAGAATGAAAGTCGGACCTAATAAGAAGGATGT 947
BSNT_03588___ 948 GATCGTTAATGTAGCACCGGTGATTGTGGACGGGATTTTGAAAGGCAGCG 997
||||||.||.||||||||.|||||.||.||.||.|||||.||||||||.|
BPUM_2149___r 948 GATCGTCAACGTAGCACCAGTGATCGTTGATGGCATTTTAAAAGGCAGTG 997
BSNT_03588___ 998 TCGGCGTGATTCACGATGTTTCCGAAATTAAAATGCTGACAGCGGAGCTT 1047
|||||||.|||||.||.||.||.||||||.||...||.||....||..|.
BPUM_2149___r 998 TCGGCGTCATTCATGACGTATCAGAAATTCAATCACTCACCAATGAATTA 1047
BSNT_03588___ 1048 AATCGCGCCAGACAAATTATTCGCACGCTTGAAGCGAAATACACGTTTGA 1097
|||...||.||.||..|.||.||.||.|||||.||.||.|||||.|||||
BPUM_2149___r 1048 AATAAAGCAAGGCAGCTCATCCGAACACTTGAGGCAAAGTACACTTTTGA 1097
BSNT_03588___ 1098 CGACATTATCGGCAAAAGCGAGCAAATGCTGGTTGCGCTTGAGCAGGCGA 1147
.||||||||.||..||||.|||||||||||.|||||||||||||||||.|
BPUM_2149___r 1098 AGACATTATTGGAGAAAGTGAGCAAATGCTTGTTGCGCTTGAGCAGGCAA 1147
BSNT_03588___ 1148 AGCTCGGTGCGAAAACACCGGCAACCATCTTGCTGCGCGGGGAATCAGGA 1197
|.||.||.||.||||||||.||.|||||.||.||..|.||.||.|||||.
BPUM_2149___r 1148 AACTAGGGGCAAAAACACCAGCCACCATTTTACTCAGAGGAGAGTCAGGT 1197
BSNT_03588___ 1198 ACAGGAAAAGAACTGTTCGCCCATGCCATCCATAACGAAAGTGACCGGAA 1247
||.||.||||||.|.||.||.||.||.||.||.||.|||||||||||.||
BPUM_2149___r 1198 ACTGGGAAAGAATTATTTGCGCACGCTATACACAATGAAAGTGACCGAAA 1247
BSNT_03588___ 1248 ATACAATAAATTTATTCGCGTGAATTGTGCAGCCCTTTCTGAAAACCTGC 1297
|||.|||...|||.|..|.||.||.|||||.|||.|.||.||||..||..
BPUM_2149___r 1248 ATATAATCGTTTTGTGAGAGTCAACTGTGCTGCCTTATCAGAAACACTTT 1297
BSNT_03588___ 1298 TCGAATCAGAATTGTTCGGCTATGAGGATGGCGCGTTTTCAGGAGCGAAG 1347
|.||.|||||..|.||.|||||.|||||.||.||.|||||.||.||||.|
BPUM_2149___r 1298 TAGAGTCAGAGCTTTTTGGCTACGAGGAAGGTGCATTTTCTGGTGCGAGG 1347
BSNT_03588___ 1348 CGCGGCGGTAA-AAAGGGTTTATTTGAGGAAGCAAATAACGGCAGTATTT 1396
||.|||||.|| |||||| .|.|||||.|||||.|||.|.||||||||.|
BPUM_2149___r 1348 CGAGGCGGGAAGAAAGGG-CTGTTTGAAGAAGCGAATCATGGCAGTATCT 1396
BSNT_03588___ 1397 TCTTAGATGAAATCGGTGAGCTGACACAAAATATGCAGGCCAAATTGCTA 1446
|.||||||||.||.|||||..||||.|.||.||..||.||.|||||..||
BPUM_2149___r 1397 TTTTAGATGAGATTGGTGAAATGACGCCAAGTACACAAGCGAAATTATTA 1446
BSNT_03588___ 1447 CGCGTCCTTCAAGAAAAGGAAATCGTCAGAGTGGGCGGCACGAAAGCGAT 1496
||||||.|.||.||.||.|||||.||.|||||.|||||.||.||||||||
BPUM_2149___r 1447 CGCGTCATGCAGGAGAAAGAAATTGTGAGAGTAGGCGGAACAAAAGCGAT 1496
BSNT_03588___ 1497 CCCTGTCAATGTCAGAGTGATCGCGGCGACAAATGTAAATATTGAAAAGG 1546
.||.||..||||..|.|||||..|.||.||||||||.|||||||||||.|
BPUM_2149___r 1497 ACCAGTTGATGTGCGTGTGATTACTGCAACAAATGTCAATATTGAAAAAG 1546
BSNT_03588___ 1547 CGATGGCGGACGGAACATTCCGGGAAGACCTGTATTACCGGATCAACCGC 1596
||||||||||.||.|..|||.|.||.|||.|.|||||||||||.|||.|.
BPUM_2149___r 1547 CGATGGCGGAAGGGAAGTTCAGAGAGGACTTATATTACCGGATGAACAGA 1596
BSNT_03588___ 1597 TATCCGATCTCCATCCCGCCTTTGCGGCAGCGGTTGGAGGACATTGAAGC 1646
|||||||||||.||.||||||.|..|||||||..|.||.||||||||..|
BPUM_2149___r 1597 TATCCGATCTCTATTCCGCCTCTAAGGCAGCGCCTTGAAGACATTGACTC 1646
BSNT_03588___ 1647 ATTGAG----CGTCAGACTTATCCAAAAGATCAACCGGGATTACGGCAGG 1692
.||.|| ||| ||.||.||.||.|||||....||.||.||..|.
BPUM_2149___r 1647 CTTAAGTAAACGT----CTCATTCAGAAAATCAATTTAGACTATGGTCGA 1692
BSNT_03588___ 1693 AATGTAAAAG-GGCTCTCACAGCAAGCCTTGCGC------GCCTT--ATC 1733
||||| .|| |||| |.||||.|.| ||||| |.||| ||
BPUM_2149___r 1693 AATGT--GAGCGGCT-TAACAGAAGG---TGCGCTCGATAGACTTCGAT- 1735
BSNT_03588___ 1734 TGCCTACCATTGGCCTGGGAATGTCCGGGAGCTTGAAAATGTCCTTGGAC 1783
|||||...|||||.|||||.||..|.||.||.||||||||.|||||||
BPUM_2149___r 1736 --CCTACAGCTGGCCAGGGAACGTAAGAGAACTGGAAAATGTTCTTGGAC 1783
BSNT_03588___ 1784 GAGCCATGATTTTTCTGAATCCGCATATGGAATGGATTGAAAAAGATCA- 1832
||||||||||.|||.||||||||||....||||||||.||..|||||||
BPUM_2149___r 1784 GAGCCATGATCTTTTTGAATCCGCAAGAAGAATGGATCGATGAAGATCAT 1833
BSNT_03588___ 1833 -----CTTGCCTGTATTC-GAACTTGAGCAAAAAGAAAATGACACAGATC 1876
||| |.||.|.|| ||| |||||..||||||| |||.|
BPUM_2149___r 1834 ATTTCCTT-CATGGAGTCAGAA---GAGCAGGAAGAAAA------AGAGC 1873
BSNT_03588___ 1877 A--GGGAACAGGTTTTAATT---TTCCGGATATTGAAGGCGAAAAGCTGT 1921
| .|||||.||.|.|.|.| ||| ||.||.||.|..||.|
BPUM_2149___r 1874 AACAGGAACTGGCTGTCAGTCAATTC--------GAGGGAGAGACTCTTT 1915
BSNT_03588___ 1922 CTGTCGCAGTAGAAAAATTTGAAGCGCATTTGATCCAGCAAACGCTTGAA 1971
|.|..||.||.|||...|||||||||||.|||||..|.|||||.||||||
BPUM_2149___r 1916 CGGATGCTGTTGAAGCGTTTGAAGCGCAGTTGATTAAACAAACCCTTGAA 1965
BSNT_03588___ 1972 AAGCATCATTTTAACCGGACAAAAACAGCAAAAGCTCTCGGTGTCAGCAT 2021
||||||||.||.|||||.||.||||||||.|||.|..|.||..|.|||||
BPUM_2149___r 1966 AAGCATCAATTCAACCGCACGAAAACAGCGAAAACGTTAGGGATTAGCAT 2015
BSNT_03588___ 2022 TCGGAA-CTTATATTACAAAATGGATAAATATGGCCTTGCAAATGAAGGC 2070
|||.|| ||| ||.||.|||||||||||||||...||||||||.||..||
BPUM_2149___r 2016 TCGAAATCTT-TACTATAAAATGGATAAATATCAACTTGCAAAAGATAGC 2064
BSNT_03588___ 2071 ATGCAATAA 2079
|||||||||
BPUM_2149___r 2065 ATGCAATAA 2073
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.