Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03580 and BPUM_2144
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:06
# Commandline: needle
# -asequence dna-align/BSNT_03580___bkdAA.1.24716.seq
# -bsequence dna-align/BPUM_2144___bfmBAA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03580___bkdAA-BPUM_2144___bfmBAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03580___bkdAA-BPUM_2144___bfmBAA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03580___bkdAA
# 2: BPUM_2144___bfmBAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1023
# Identity: 764/1023 (74.7%)
# Similarity: 764/1023 (74.7%)
# Gaps: 60/1023 ( 5.9%)
# Score: 2813.5
#
#
#=======================================
BSNT_03580___ 1 ATGAGTACAAACCGACATCAAGCACTAGGGCTGACTGATCAGGAAGCCGT 50
|||||||..|..||.|||||.|.|.||||..|..|||||.|..||||..|
BPUM_2144___b 1 ATGAGTAACATGCGTCATCATGAATTAGGATTATCTGATGAACAAGCAAT 50
BSNT_03580___ 51 TGATATGTATAGAACCATGCTGTTAGCAAGAAAAATCGATGAAAGAATGT 100
||||||.||.|||||.|||||..|||||||||||||.||||||.|.||||
BPUM_2144___b 51 TGATATATACAGAACAATGCTTCTAGCAAGAAAAATTGATGAACGGATGT 100
BSNT_03580___ 101 GGCTGTTAAACCGTTCTGGCAAAATTCCATTTGTAATTTCTTGTCAAGGA 150
||||.|||||||||||.||.|||||||||||.||.||.|||||||||||.
BPUM_2144___b 101 GGCTTTTAAACCGTTCAGGTAAAATTCCATTCGTTATATCTTGTCAAGGG 150
BSNT_03580___ 151 CAGGAAGCAGCA-CAGGTAGGAGCGGCTTTCGCACTTGACCGTGAAATGG 199
|||||||| ||| ||.||.||.||.||||||||.||..|..|.|||..||
BPUM_2144___b 151 CAGGAAGC-GCAGCAAGTTGGTGCTGCTTTCGCTCTCAATAGAGAAGAGG 199
BSNT_03580___ 200 ATTATGTATTGCCGTACTACAGAGACATGGGTGTCGTGCTCGCGTTTGGC 249
||||.||.||.||.||||||.|.||.|||||.||.||.||.||.|||||.
BPUM_2144___b 200 ATTACGTCTTACCTTACTACCGTGATATGGGGGTTGTCCTTGCATTTGGA 249
BSNT_03580___ 250 ATGACAGCAAAGGACTTAATGATGTCCGGGTTTGCAAAAGCAGCAGATCC 299
|||||||||||.||.|||||||||||.||.|||||||||..||..|||||
BPUM_2144___b 250 ATGACAGCAAAAGATTTAATGATGTCAGGTTTTGCAAAACAAGACGATCC 299
BSNT_03580___ 300 GAACTCAGGAGGCCGCCAGATGCCGGGACATTTCGGACAAAAGAAA---A 346
.||||||||.|||.|.||||||||.||||||||.|||| ||||| |
BPUM_2144___b 300 AAACTCAGGTGGCAGACAGATGCCAGGACATTTTGGAC---AGAAATCCA 346
BSNT_03580___ 347 ACCGCATTGTGACGGGATCATCTCCGGTTACAACGCAAGTGCCGCACGCA 396
|.||.||||||||.|||||.||.||.|||||||||||.||.||.||.|||
BPUM_2144___b 347 ATCGAATTGTGACAGGATCTTCACCTGTTACAACGCAGGTTCCTCATGCA 396
BSNT_03580___ 397 GTCGGTATTGCGCTTGCGGGACGTATGG---AGAAAAAGGATATCGCAGC 443
||.||.||.||.|||||.|||||..|.| ||||||| .|.|..|||
BPUM_2144___b 397 GTGGGAATCGCACTTGCTGGACGGCTAGATCAGAAAAA--CTTTGTCAG- 443
BSNT_03580___ 444 CTTTGTTACATTTGGGGAAGGGTCTTCAAACCAAGGCGATTTCCACGAAG 493
||||||.||.||.||.|||||.||||||||||||||.|||||||||||||
BPUM_2144___b 444 CTTTGTCACGTTCGGTGAAGGCTCTTCAAACCAAGGTGATTTCCACGAAG 493
BSNT_03580___ 494 GGGCAAACTTTGCCGCTGTCCATAAGCTGCCGGTTATTTTCATGTGTGAA 543
||||.|||||.||.|||||.|||||||||||.||||||||||||||||||
BPUM_2144___b 494 GGGCTAACTTCGCTGCTGTGCATAAGCTGCCTGTTATTTTCATGTGTGAA 543
BSNT_03580___ 544 AACAACAAATACGCAATCTCGGTGCCTTACGATAAGCAAGTCGCATGTGA 593
|||||.||.||.|||||.||.|||||.|||||.||.|||||.||.|||||
BPUM_2144___b 544 AACAATAAGTATGCAATTTCCGTGCCGTACGACAAACAAGTAGCTTGTGA 593
BSNT_03580___ 594 GAACATTTCCGACCGTGCCGTTGGCTATGGGATGCCTGGCGTAACTGTGA 643
...||||||.||.|||||..||||.||.||.||||||||||||||.||..
BPUM_2144___b 594 ACGCATTTCAGATCGTGCGATTGGGTACGGAATGCCTGGCGTAACCGTTG 643
BSNT_03580___ 644 ATGGAAATGATCCGCTGGAAGTTTATCAAGCGGTCAAAGAAGCACGCGAA 693
||||.|||||||||||.|||||.|||...||.||||||||| ||||.
BPUM_2144___b 644 ATGGCAATGATCCGCTTGAAGTATATGCCGCTGTCAAAGAA----GCGAG 689
BSNT_03580___ 694 AG-------GGCACGCAGAGGAGAAGGCCCGACATTAATTGAAACGATTT 736
|| |||| |||||.|||||.||.||.||.|||||||||||.|
BPUM_2144___b 690 AGACCGTGCGGCA---AGAGGCGAAGGACCAACGTTGATTGAAACGATCT 736
BSNT_03580___ 737 CTTACCGCCTTACACCACATTCCAGTGATGACGATGA--CAGCAGCTACA 784
|||||||..|.||..|.|||||.|||||||||||||| || |||||..
BPUM_2144___b 737 CTTACCGTTTAACTGCGCATTCAAGTGATGACGATGATTCA--AGCTATC 784
BSNT_03580___ 785 GAGGCCGTGAAGAAGTAGAGGAAGCGAAAAAAAGTGATCCCCTGCTTACT 834
|||.....||||||||....|||||||.|||.|..|||||.||..|.|..
BPUM_2144___b 785 GAGAAAAAGAAGAAGTGCTCGAAGCGAGAAAGAAAGATCCGCTCATCAAA 834
BSNT_03580___ 835 TATCAAGCTTACTTA----AAGGAAA---CAGGCCTGC-----TGTCCGA 872
|||.||.|.||.||| ||||||| ||.|.||.| ||...||
BPUM_2144___b 835 TATGAAACGTATTTAACCGAAGGAAACGTCATGACTTCAGAAATGAAAGA 884
BSNT_03580___ 873 TGAGATGGAACAAACCATGCTGGATGAAATTATGGCAATCGTAAATGAAG 922
.|||||| |||| |.|||||.|||..|||||||||.||||
BPUM_2144___b 885 AGAGATG--ACAA----------AAGAAATCATGCAAATCGTAAACGAAG 922
BSNT_03580___ 923 CGACGGATGAAGCGGAGAACGCCCCTTATGCAGCTCCTGAGTCAGCG--C 970
|.||.|||||||||||.|||||..|||||||.|.|.|||| .|||| |
BPUM_2144___b 923 CCACTGATGAAGCGGAAAACGCTGCTTATGCTGATGCTGA--AAGCGCAC 970
BSNT_03580___ 971 TTGATTATGTGTATGCGAAGTAG 993
||..|||.|||||||||.||||.
BPUM_2144___b 971 TTCGTTACGTGTATGCGGAGTAA 993
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