Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03578 and BPUM_2142
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:06
# Commandline: needle
# -asequence dna-align/BSNT_03578___bkdB.1.24716.seq
# -bsequence dna-align/BPUM_2142___bfmBB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03578___bkdB-BPUM_2142___bfmBB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03578___bkdB-BPUM_2142___bfmBB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03578___bkdB
# 2: BPUM_2142___bfmBB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1343
# Identity: 928/1343 (69.1%)
# Similarity: 928/1343 (69.1%)
# Gaps: 154/1343 (11.5%)
# Score: 3110.5
#
#
#=======================================
BSNT_03578___ 1 ATGGCAATTGAACAAATGACGATGCCGCAGCTTGGAGAAAGCGTAACAGA 50
.||||||.|||||||||||..|||||.|||.|.||.|||||.||||||||
BPUM_2142___b 1 GTGGCAACTGAACAAATGAAAATGCCTCAGTTAGGTGAAAGTGTAACAGA 50
BSNT_03578___ 51 GGGGACGATCAGCAAATGGCTTGTCGCCCCCGGTGATAAAGTGAACAAAT 100
.||.||.||||||||||||||.||..|.||.||.|||.|.|||||.||||
BPUM_2142___b 51 AGGAACCATCAGCAAATGGCTCGTTTCACCTGGCGATCATGTGAATAAAT 100
BSNT_03578___ 101 ACGATCCAATCGCGGAAGTCATGACAGATAAGGTAAATGCAGAGGTTCCG 150
||||||||||.||.|||||||||||.|||||.||.||.|||||.||.|||
BPUM_2142___b 101 ACGATCCAATTGCAGAAGTCATGACGGATAAAGTGAACGCAGAAGTCCCG 150
BSNT_03578___ 151 TCTTCTTTTACTGGTACGATAACAGAGCTTGTGGGAGAAGAAGGCCAAAC 200
||.||||||||.||.||.||.|||.||||....|..|||||||||.|.||
BPUM_2142___b 151 TCATCTTTTACAGGAACCATTACAAAGCTATCAGCTGAAGAAGGCGATAC 200
BSNT_03578___ 201 -CTTGCAAGTCGGAGAAGTGATTTGCAAAATTGAAACAGAAGGCGCGAAT 249
||| |||||.|||||||||.|.||..||||||||...|||||
BPUM_2142___b 201 ACTT-CAAGTAGGAGAAGTGTTCTGTGAAATTGAAGTGGAAGG------- 242
BSNT_03578___ 250 CCGGCT--GAACAAA------AACAAGAACAGCCAGCTGCTTCA--AAAG 289
|.||| .|.|||| ||.|||||..|.||.||| | ||||
BPUM_2142___b 243 -CAGCTCACAGCAAAGTGCAGAAGAAGAAGCGGCACCTG----AGCAAAG 287
BSNT_03578___ 290 CCGCTGAGACGCCTGCTGCA--------AAAAGTGCCGAAGCAGCTGATC 331
|||..|.||||..||| |||||.| ||||
BPUM_2142___b 288 ----TGAAGCACCTGAAGCAGATCAAACAAAAGAG-----------GATC 322
BSNT_03578___ 332 AGCCCAA-TAAAAAG---CGCTACTCGCCAGCTGTACTCCGTTTGGCCGG 377
| || |.||||| ||||||||.|||||.||.||.|||||.||.|.
BPUM_2142___b 323 A----AAGTCAAAAGAAACGCTACTCTCCAGCGGTCCTTCGTTTAGCAGA 368
BSNT_03578___ 378 AGAGCACGGCATTGACCTCGATCAAGTAACAGGAACAGGTGCCGGCGGGC 427
.||||||.|||||||..|.|....|||...||||||.||.||.||.|||.
BPUM_2142___b 369 TGAGCACAGCATTGATTTAGCGGCAGTGCAAGGAACGGGAGCAGGTGGGA 418
BSNT_03578___ 428 GCATCACACGAAAAGAT---ATTCAGCGCTTAATTGAAACAGGCGGCGTA 474
|.||||||.|||||||| .|||||| |.|||||||..||||||.|.
BPUM_2142___b 419 GAATCACAAGAAAAGATTTACTTCAGC---TGATTGAAAGCGGCGGCATG 465
BSNT_03578___ 475 CAAGAACAGAAGG------CTGAGGAGCCGAA--AACAG----------C 506
|||| |||||| ||| .||| ||||| |
BPUM_2142___b 466 CAAG---AGAAGGTAGCACCTG------TGAATGAACAGGCAATCAAGCC 506
BSNT_03578___ 507 AGCTCCTGCACCGAAGTCTGCATCAAAACCTGAGCCAAAAGAAGAGACGT 556
||..|||| .|.||| |||||| |||||||||..|.|.|.|
BPUM_2142___b 507 AGAGCCTG---TGCAGT---CATCAA------AGCCAAAAGCGGCGCCTT 544
BSNT_03578___ 557 CATATCCTGCGTCTGCA--GCC-GGTGATAAAGAAATCCCTGTCACAGGT 603
| .||| |||.|| ||| ||||||||.|||.|.||.|||||
BPUM_2142___b 545 C-CATC-----TCTACAATGCCTGGTGATAATGAACTGCCAGTCAC---- 584
BSNT_03578___ 604 G----TAAGAAAAGCAATTGCTTCCAATATGAAGCGAAGCAAAACA-GAA 648
| |.||..|.||.|||||..|.||||||..|.||||| ||||| |||
BPUM_2142___b 585 GCCAATCAGGCAGGCGATTGCGGCAAATATGCTGAGAAGC-AAACATGAA 633
BSNT_03578___ 649 ATTCCGCATGCTTGGACGATGATGGAAGTCGACGTCACAAATATGGTTGC 698
|||||||||||.|||||.|||||||||||.||.||.|||||..|.||..|
BPUM_2142___b 634 ATTCCGCATGCATGGACAATGATGGAAGTTGATGTGACAAACCTTGTGAC 683
BSNT_03578___ 699 ------ATATC-GCAACAGTATAAAAGATTCC--TTTAAGAAG--ACAGA 737
|.||| || |.||.|| || |||| ||| |.|||
BPUM_2142___b 684 TAGAAGAAATCAGC-------TCAAGGA--CCAATTTA--AAGCAAAAGA 722
BSNT_03578___ 738 GGGCTTTAATTTAACGTTCTTCGCCTTTTTTGTAAAAGCGGTCGCTCAG- 786
.|||||||||||.||||||||.||.||.|||||.|||||.||.||.|||
BPUM_2142___b 723 AGGCTTTAATTTGACGTTCTTTGCGTTCTTTGTCAAAGCAGTGGCACAGA 772
BSNT_03578___ 787 GCGTTAAAAGAATTCCCACAAATGAATAGCATGTGGGCGGGGGACAAAAT 836
|| |||||.|||||||||.|||||||.|||||||||||.||.||.|||||
BPUM_2142___b 773 GC-TTAAAGGAATTCCCAGAAATGAACAGCATGTGGGCTGGAGATAAAAT 821
BSNT_03578___ 837 TATTCAGAAAAAGGATATCAATATTTCAATTGCAGTTGCCACAGAGGATT 886
|.|.||.||.||.|..||||||.|.||.|||||.|||||.||.||.||..
BPUM_2142___b 822 TGTGCAAAAGAAAGCGATCAATGTCTCGATTGCTGTTGCAACTGATGACG 871
BSNT_03578___ 887 CTTTATTTGTTCCGGTGATTAAAAACGCTGATGAAAAAACAATTAAAGGC 936
||.|.||||||||.||.|||||..|.||.|||||||||||.|||||||||
BPUM_2142___b 872 CTCTTTTTGTTCCAGTCATTAAGGATGCAGATGAAAAAACGATTAAAGGC 921
BSNT_03578___ 937 ATTGCGAAAGACATTACCGGCCTAGCTAAAAAAGTAAGAGACGGAAAACT 986
||.||.||.||.|||...|..||.|||...||.||.|||.|.||.|
BPUM_2142___b 922 ATCGCCAAGGAAATTCATGAGCTTGCTTCCAAGGTGAGACAAGGTA---- 967
BSNT_03578___ 987 CACTGCAG----ATGACATGCAGGGAGGCACGTTTACCGTCAACAACACA 1032
|.|||.|| .|||||||.|.||.|||||.|||||.||.||||||||.
BPUM_2142___b 968 CGCTGAAGCAAAGTGACATGGAAGGCGGCACCTTTACTGTAAACAACACG 1017
BSNT_03578___ 1033 GGTTCGTTCGGCTCTGTTCAGTCAATGGGCATTATCAACTACCCTCAGGC 1082
||.||.||.||.|||||.||.||.|||||.||.||.||.||.||.||.||
BPUM_2142___b 1018 GGATCATTTGGTTCTGTACAATCTATGGGAATCATTAATTATCCGCAAGC 1067
BSNT_03578___ 1083 TGCGATTCTTCAAGTAGAATCCATCGTCAAACGCCCGGTTGTCATGGACA 1132
.||||||.|.|||||||||||.|||||.||.||.||| ||.||.|..|
BPUM_2142___b 1068 GGCGATTTTACAAGTAGAATCGATCGTGAAGCGTCCG---GTGATTGTAA 1114
BSNT_03578___ 1133 ATGGCATGATTGCTGTCAGAGACATGGTTAATCTGTGTCTGTCCTTAGAT 1182
||||.||||||||.|..||||||||||||||.||.|||||.||.|||||.
BPUM_2142___b 1115 ATGGTATGATTGCAGCGAGAGACATGGTTAACCTTTGTCTCTCATTAGAC 1164
BSNT_03578___ 1183 CACAGAGTGCTTGACGGTCTCGTGTGCGGACGATTCTTGGGACGTGTGAA 1232
||||||||.||.||.|||||.||.|||||..|||||.|...|||..|.||
BPUM_2142___b 1165 CACAGAGTTCTCGATGGTCTTGTATGCGGCAGATTCCTTCAACGGATTAA 1214
BSNT_03578___ 1233 ACAAATTTTAGAATCGATTGACGAGAAGACATCTGTTTACTAA 1275
|||||||.|.|||...|||||||||.|||||||||||||||||
BPUM_2142___b 1215 ACAAATTCTTGAAGGCATTGACGAGCAGACATCTGTTTACTAA 1257
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