Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03573 and BPUM_2140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:06
# Commandline: needle
# -asequence dna-align/BSNT_03573___bmrU.1.24716.seq
# -bsequence dna-align/BPUM_2140___bmrU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03573___bmrU-BPUM_2140___bmrU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03573___bmrU-BPUM_2140___bmrU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03573___bmrU
# 2: BPUM_2140___bmrU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1002
# Identity: 591/1002 (59.0%)
# Similarity: 591/1002 (59.0%)
# Gaps: 216/1002 (21.6%)
# Score: 1554.0
#
#
#=======================================
BSNT_03573___ 1 ATGAGC-CA---CCGGAAAGCGTTACTGATTCATAACGGAAATGCCGG-C 45
||| || || |...||||||.|.||.|||.||||.||||||||.|| |
BPUM_2140___b 1 ATG-GCACAATTCAAAAAAGCGATGCTCATTTATAATGGAAATGCTGGAC 49
BSNT_03573___ 46 AACAAAAATATAGAAAAAGCACTTGGTGCTGTC-----GTGCCGGTTTTA 90
|| |||||.||.|||||||..|| |.||| ||.||..||.|.
BPUM_2140___b 50 AA-AAAAACATGGAAAAAGTTCT-----CGGTCAAACAGTACCTCTTCTT 93
BSNT_03573___ 91 TCTCACCATTTAGATGAGGTGATTATTAAACAGACAAAGAA---AAAGGA 137
||||..|||.|.|||||..|.|||.||||||..||||||.| || |
BPUM_2140___b 94 TCTCTACATATTGATGAACTCATTCTTAAACCAACAAAGCAGCCAA---A 140
BSNT_03573___ 138 TGATGCGTATCATTTTTGCCGATCCATTGATGATTCTGTCGACA------ 181
||||||.|||||.||.||.||..|.|||||||| ||||
BPUM_2140___b 141 TGATGCTTATCAATTCTGTCGTACAATTGATGA-------GACAATAGAA 183
BSNT_03573___ 182 ---CCGTCTTCATTCTCGGCGGCGACGGCACGATCCATCAATGCATAAAT 228
| |..||||..|.|||||.||.||.||..|.|||.||||.||.|||
BPUM_2140___b 184 TTGC--TGATCATATTAGGCGGAGATGGAACCGTGCATGAATGTATGAAT 231
BSNT_03573___ 229 GCTATCAGCGCTCTAGAAAGAAA-ACCCGCGGTCGGAATTTTGCCCGGAG 277
|..|||.|||...||| |||||| .||.||.||.|..|||||.||.||.|
BPUM_2140___b 232 GGCATCGGCGGGTTAG-AAGAAAGGCCGGCTGTAGCGATTTTACCAGGCG 280
BSNT_03573___ 278 GCACGTGCAATGACTTTTCAAGAGTGCTTGGCATCCCTCAAAATCTTGCA 327
|.||.||||||||||||||.|||...|||||.|||||.|||.|..|...|
BPUM_2140___b 281 GGACATGCAATGACTTTTCTAGAACCCTTGGTATCCCGCAACAAATACAA 330
BSNT_03573___ 328 AAGGCCGCGGA---------AGCACTTATGGCAGGAAATAAAACCAGCGT 368
||.|||||..| || ||||| |.|.|.|||| || ||
BPUM_2140___b 331 AAAGCCGCTCAAATGATAATAG-----ATGGC-GTAGAAAAAA--AG-GT 371
BSNT_03573___ 369 AGACGTATGTCA--GATGAATGACCGTTATTTTTTAAATTTCTGGGGGAT 416
.|||.|| .||| |..||| ||.||.||.||.|||||.||.|||||.||
BPUM_2140___b 372 CGACTTA-ATCAAGGCAGAA-GATCGATACTTGTTAAACTTTTGGGGAAT 419
BSNT_03573___ 417 CGGCTTAATTGCAGAAACGTCGAATCAA-ATCAACGAAACGGAAAAAGCA 465
|||..|.||||||||.|||||.|| ||| ||.||.||.|.|||||||||.
BPUM_2140___b 420 CGGGCTCATTGCAGACACGTCCAA-CAATATTAATGACAAGGAAAAAGCG 468
BSNT_03573___ 466 TTATTGGGAAAAATCAGCTATTTTACAAGTGCGTTGCGAACCGTCTCATC 515
.||.|.||.|||||||||||.||.||||||||..||||.|||.|
BPUM_2140___b 469 GTACTCGGCAAAATCAGCTACTTCACAAGTGCCCTGCGCACCTT------ 512
BSNT_03573___ 516 CGCTGCA-------TCGTTTC-----CGATGACATTAAAAATTGACGGAA 553
||.||| .|.|||| ||| |.||.||
BPUM_2140___b 513 -GCAGCAAACAGAGCCCTTTCACGTACGA--------------GTCGAAA 547
BSNT_03573___ 554 AAGA-----AATTA------AAGAAGAAGCCGTTATGCTGCTTGTGATGA 592
.||| || | ||||||||||.||.||..|.|||||.||||
BPUM_2140___b 548 CAGAGGAGGAA--AGCTGGGAAGAAGAAGCTGTCATCGTTCTTGTCATGA 595
BSNT_03573___ 593 ATGGCCAATACATTGGAACGAATCGAATTCCTCTGCCCGATGC--CAGTA 640
||||.||.|..||.||.||.|||..||||..|.||||...||| || |
BPUM_2140___b 596 ATGGACATTTTATCGGGACAAATAAAATTGATTTGCCTAGTGCAGCA--A 643
BSNT_03573___ 641 TTGAAGACGG------------CTTACTTGATGTTCTCATATGCCGCAAC 678
||||.||.|| |||| ||.|||.|.||.
BPUM_2140___b 644 TTGATGATGGGAAAGCAGAAATCTTA------------ATTTGCAGAAAT 681
BSNT_03573___ 679 ACCAACCTCACCGCGCTGCGGGAG-------CTGATGAGCATGGAACAG- 720
||.|.|.||.|.||.||....||| || ||||.|..||||.||
BPUM_2140___b 682 ACGAGCTTCTCTGCTCTAAAAGAGATCTTTTCT-ATGAACCGGGAAGAGC 730
BSNT_03573___ 721 -GGCTCAATTGATCGTTTTACCGGAGAGCTGTCCTATGTC---CAGGCCT 766
|| || || |||.|||||.||.||.|| |.|| ||.||.|
BPUM_2140___b 731 TGG---AA--GA---TTTCACCGGCGACCTTTC---TCTCATTCAAGCAT 769
BSNT_03573___ 767 CCCGTATCGAAATTGAAACAGA--CACTGCCAAAAAGGCGGATATGGATG 814
||.|||| .|||| || ||.|||.|.|||.||||||
BPUM_2140___b 770 CCAGTAT----------TCAGATCCA----CACAAAAGAGGAAATGGAT- 804
BSNT_03573___ 815 GAGAAGTTTATACACATACACCCGCAGT---CAT-TCAGGTCCTGC---- 856
|.|.|||||.|| ..||.||| ||| .|||.||||||
BPUM_2140___b 805 -----GCTGATACAGAT---GGCGAAGTGTACATGACAGCTCCTGCTTCT 846
BSNT_03573___ 857 -------------CGCAGCATATCGA-CATGCTTGTTCCCGCAAATGGAT 892
..|||||| |.|| |.|..|||||| |||..|.||
BPUM_2140___b 847 TTAGAAGTGTTAAAACAGCAT-TTGACCTTTATTGTTC---CAACAGAAT 892
BSNT_03573___ 893 AA 894
||
BPUM_2140___b 893 AA 894
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