Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03562 and BPUM_2134
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_03562___yqjB.1.24716.seq
# -bsequence dna-align/BPUM_2134.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03562___yqjB-BPUM_2134.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03562___yqjB-BPUM_2134.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03562___yqjB
# 2: BPUM_2134
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 585
# Identity: 347/585 (59.3%)
# Similarity: 347/585 (59.3%)
# Gaps: 129/585 (22.1%)
# Score: 1018.0
#
#
#=======================================
BSNT_03562___ 1 ATGCGTTTTTTCTTATGTTCGATTTT---TATGATGATTTCACCGATTTG 47
||||||.||||.||.|.|.|..|.|| ||||....|||||||.||.||
BPUM_2134 1 ATGCGTCTTTTATTTTATACCGTATTGACTATGTCCCTTTCACCTATCTG 50
BSNT_03562___ 48 GCCGCTCGGCGAAAATCCGCTGCCGGGTGATCCATATGTTATTGTCAACA 97
|||||||||..||||.|||||.||.||.||.||||||||.|||.|.||.|
BPUM_2134 51 GCCGCTCGGACAAAACCCGCTTCCAGGAGACCCATATGTCATTATTAATA 100
BSNT_03562___ 98 AGCGAACAAATGAACTTGC------TGTT---------ATCC-------- 124
|.|.||||||||||||||| ||.| ||||
BPUM_2134 101 AACAAACAAATGAACTTGCCTATATTGATCAAGGTCAAATCCAAAAAATA 150
BSNT_03562___ 125 --TCGA----CAACAGAGTAGAAGGCGTGTATAGTGTGGCGACTGGAAAA 168
||.| |||||| ||||||
BPUM_2134 151 TATCCAGCTTCAACAG----------------------------GGAAAA 172
BSNT_03562___ 169 --ACAGATGATTTGACGCCTGAAGGAGAGTTTTCGGTAACGGTAAAAGCG 216
||| |||||.|||||.|||||.||.|||.|..|.|.|.|.||||||
BPUM_2134 173 CGACA---GATTTAACGCCAGAAGGGGAATTTACCATTATGATCAAAGCG 219
BSNT_03562___ 217 GAAAATCCTTACTACAGAAAGAAAAATATTGAAGGGGGATCTCCTG---- 262
.||.||||.||.||||||||.||.|||||.|||||.|| ||
BPUM_2134 220 AAAGATCCGTATTACAGAAAAAAGAATATCGAAGGCGG------TGCGAA 263
BSNT_03562___ 263 --ACAACCCGCTTGGGGCCAGATGGATCGGATTTGACGCGAAAGGAACGG 310
|.|||||.|||||....||||||||.||||||||.||...||||||.|
BPUM_2134 264 GAATAACCCTCTTGGCAGAAGATGGATTGGATTTGATGCACGAGGAACAG 313
BSNT_03562___ 311 ACGGGCGGATTTATGGAATTCATGGGACAAACCGAGAGGA---ATCAGTA 357
|.||..|.|..||.||||||||||||||.| |.||.|| |||..||
BPUM_2134 314 ATGGCAGAACATACGGAATTCATGGGACGA---GTGATGAAACATCGATA 360
BSNT_03562___ 358 GGGAAATTTGTGTCTAAC----GGCTGTATACGTATGCATAACGATGAGG 403
|||||||| |.|.|| ||||||.|..|..|.|||||..|.||.|
BPUM_2134 361 GGGAAATT----TATTACGGCAGGCTGTGTGAGACTTCATAATCAAGATG 406
BSNT_03562___ 404 TCG---TTC-ATTTGTTTCAAAC--GATACCAGTAGGAACGAGAGTGCTG 447
|.| ||| ||||| || |.|.||.||.|||||.|.|||...|
BPUM_2134 407 TAGAGCTTCTATTTG------ACCAGCTTCCGGTTGGAACAAAAGTATGG 450
BSNT_03562___ 448 ATCACGGACGACAACCG-CTCTTTTGAGGAGATTGCCATCGAGCATAAAG 496
||.|| .||..|.|||| .||.|||||..||.||||| ||||
BPUM_2134 451 ATTAC-AACATCGACCGATTCATTTGAAAAGCTTGCC---------AAAG 490
BSNT_03562___ 497 CTCTGATAAAAAAGCAGGATATTCCCATTGAATAA 531
|.||.||||..||| |.||||
BPUM_2134 491 ---------ACAAACAGGCCATT--CGTTGA---- 510
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