Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03561 and BPUM_2132
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_03561___yqjC.1.24716.seq
# -bsequence dna-align/BPUM_2132___yqjC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03561___yqjC-BPUM_2132___yqjC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03561___yqjC-BPUM_2132___yqjC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03561___yqjC
# 2: BPUM_2132___yqjC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 514
# Identity: 265/514 (51.6%)
# Similarity: 265/514 (51.6%)
# Gaps: 182/514 (35.4%)
# Score: 595.5
#
#
#=======================================
BSNT_03561___ 1 ATGAA-CAGGCTTGACCATATCGGGATAGCCGTTTTTTCGATAAAAGA-- 47
||||| || ..|.||||||||.|..||.||.||.|||||.||||||.|
BPUM_2132___y 1 ATGAATCA-AATCGACCATATTGCCATTGCGGTCTTTTCTATAAAAAACA 49
BSNT_03561___ 48 -----TGCA------AGAAGCT-TTTATGAAAATGTATTGGGGCTTGCAT 85
|||| |..|||| |||| .||.||||
BPUM_2132___y 50 CATCTTGCATTCTCCAACAGCTGTTTA---------------ACTGGCAT 84
BSNT_03561___ 86 TTCTTCA-----TCAAGAAACGGTTGAAGAGCAAAAGGTGAATGTTGCTT 130
|| |||| .||||| |.||...|||| |||.||
BPUM_2132___y 85 TT-TTCAGACGTACAAGA---GATTCCCGAGC---AGGAGA--------- 118
BSNT_03561___ 131 TTTTTCAAGCTGG----TAGCGTCAAACTTGAGC---------------T 161
||.|||| | |.||||| ||||||.| |
BPUM_2132___y 119 ---TTAAAGC--GTCCTTCGCGTC--ACTTGATCATGTGCACATTGAATT 161
BSNT_03561___ 162 GATAGAGCCGTTGACAGCTGACAGCCCCGTCCGTT--------------T 197
.||.||.|||.| ||||||| |
BPUM_2132___y 162 AATTGAACCGAT----------------GTCCGTTAGCAGCAAACTACAT 195
BSNT_03561___ 198 A-TTTTTGGAGAAGAA-AGGGCAGGGACTGCATCATATTGCGTTTTTGTG 245
| |||||..|.||.|| |||..||||.||.||||||||||||||
BPUM_2132___y 196 ACTTTTTTAACAAAAAGAGGAGAGGGCCTCCATCATATTGCGTT------ 239
BSNT_03561___ 246 CAACGGCCTATCTGA---ACAG-----CTTCAAGCA--TTG----TCTGA 281
||.|.| |..||| |||| |.|.||.|| ||| |||..
BPUM_2132___y 240 -AAAGTC--AGGTGACATACAGGCGGACCTAAATCATCTTGATCATCTTG 286
BSNT_03561___ 282 CCG----GCATGTTCAATTGATTGACAGGTTTCCA-AGACAGGGGGCGAA 326
.|| ||.|.||||| .|.| ||| || |||.| ||||.|
BPUM_2132___y 287 GCGTGGAGCTTCTTCAA--CAAT--CAG-----CACAGATA---GGCGCA 324
BSNT_03561___ 327 --CGGGAAAAAGATCGCGTTTATTTCCCCTCGGGAAACAAACG------G 368
||||||..|.||.||.||||||||.|| .|||.||||| |
BPUM_2132___y 325 TGCGGGAAGCAAATTGCATTTATTTCACC----AAAAGAAACGTCCGGTG 370
BSNT_03561___ 369 TGTTCTT-GTAGAGCTTTGTGAACCG--------AAAGGAGATCAACAGA 409
||||.|| |.| ||||| || ||||||||..|||
BPUM_2132___y 371 TGTTATTCGAA-----TTGTG---CGAGCACTTAAAAGGAGAGGAAC--- 409
BSNT_03561___ 410 ATGAACATGAATGA 423
|||...||||||||
BPUM_2132___y 410 ATGGCAATGAATGA 423
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