Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03558 and BPUM_2131
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_03558.1.24716.seq
# -bsequence dna-align/BPUM_2131___yqjD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03558-BPUM_2131___yqjD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03558-BPUM_2131___yqjD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03558
# 2: BPUM_2131___yqjD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1601
# Identity: 729/1601 (45.5%)
# Similarity: 729/1601 (45.5%)
# Gaps: 607/1601 (37.9%)
# Score: 2003.0
#
#
#=======================================
BSNT_03558 0 -------------------------------------------------- 0
BPUM_2131___y 1 ATGGCAATGAATGAATCGTTCAATGACTTGGCGAAATGGCGTGAAAAAGC 50
BSNT_03558 0 -------------------------------------------------- 0
BPUM_2131___y 51 ATTCATGGGCGGTGGCGAGAAACGTGCAGCTGCGCACCGGAACAAAGGTA 100
BSNT_03558 0 -------------------------------------------------- 0
BPUM_2131___y 101 AACTATCGGTTCGTGAGCGGCTGCATGAACTTCTTGACGGAGGCAGTTTC 150
BSNT_03558 0 -------------------------------------------------- 0
BPUM_2131___y 151 ATGGAAATTCAAGCATTTGCAACAGGCTGCATGTCAGAACATGTCGGTGA 200
BSNT_03558 0 -------------------------------------------------- 0
BPUM_2131___y 201 TGGTGTCGTCACTGGAACTGGACTCATTCATGGAAGGCCGGTATGTGTTT 250
BSNT_03558 0 -------------------------------------------------- 0
BPUM_2131___y 251 ATGCACAAGATGCAACCGTGCATGGGGGTTCTTTAGGCGAAATACATGCC 300
BSNT_03558 0 -------------------------------------------------- 0
BPUM_2131___y 301 AAAAAAATTGTTTCTTTAATGGATCTAGCAGCTAAAAATCAGATACCGAT 350
BSNT_03558 1 -------------------------------------------GTGGTAT 7
|||||||
BPUM_2131___y 351 CATCGGTCTGAAAGACTCAGGTGGTGCGAGAATTCAAGAGGGTGTGGTAT 400
BSNT_03558 8 CATTAGATGGATACGGTCACATATTTTACCGAAACGTCTTATATTCCGGA 57
|||||||.||||||||.||.||.|||.|.|||||.||..|.|||||.|
BPUM_2131___y 401 CATTAGAAGGATACGGACAGATTTTTAAACGAAATGTGCTGTATTCTG-- 448
BSNT_03558 58 GTC--ATTCCGCAAATATCGGTTATTTTAGGGCCGTGCGCTGGAGGCGCT 105
||| ||.|||||||||||.|||||||||||..|.||.||||||||.||.
BPUM_2131___y 449 GTCAAATCCCGCAAATATCCGTTATTTTAGGATCTTGTGCTGGAGGAGCA 498
BSNT_03558 106 GTATATTCTCCGGCACTCACAGATTTTATATTTATGGCTGAACAGACCGG 155
||.||||||||.||..|.||.||||||.|.||.|||.|.||.|||||.|.
BPUM_2131___y 499 GTCTATTCTCCTGCCTTGACTGATTTTGTGTTCATGACAGAGCAGACAGC 548
BSNT_03558 156 CCGGATGTTTATTACCGGCCCGAAGGTGATTGAAAAAGTGACAGG-GGAA 204
.|..||||||.|.||.||.|||||.||.||.|||||.|..||||| |.||
BPUM_2131___y 549 TCACATGTTTTTAACAGGTCCGAAAGTCATAGAAAAGGCAACAGGAGAAA 598
BSNT_03558 205 CAGGTTGATGCGGAGAG-CTTAGGCGGAGCGGGGATACATAATGCC-GTC 252
|||..|| |.|.||..| ||| |||||.||..|..|.||..| || |.|
BPUM_2131___y 599 CAGTCTG-TCCTGACCGTCTT-GGCGGTGCAAGTGTTCAGCA--CCAGAC 644
BSNT_03558 253 -AGCGGAAACGCGCACTTTTCCGGACATACG---------GAGAAGGAGG 292
|||||.||.|.||||| ||||| |||||.||.|
BPUM_2131___y 645 AAGCGGGAATGTGCACT---------ATACGGGGAAAGATGAGAAAGACG 685
BSNT_03558 293 TTCTGACAGGGGTGAGAAAACTGCTGTCTTATTTGCCGCTGAATGGCCGG 342
|..|.|.||..||..|||.|||..|..|.||..|.||...|||
BPUM_2131___y 686 TGTTAAAAGCAGTTCGAACACTTTTAACGTACATACCAACGAA------- 728
BSNT_03558 343 ACAACAGA-----------GCCGAAGCCAGAGAAA--GAGGCG------- 372
|||||||| ||||||.| |||.|| |||.||
BPUM_2131___y 729 ACAACAGACTGTCACGGATGCCGAAAC--GAGTAAGCGAGACGCAGATGA 776
BSNT_03558 373 TCCAGACCGTTATTAAACCGTCTTGTCCCTGCTGATACGACAAAGC---- 418
|||||.| ||| ..||||| |||..||.|
BPUM_2131___y 777 TCCAGGC--------AAC-------ATCCTGC-----CGAAGAATCCATC 806
BSNT_03558 419 -----CTTATGATGTTCGGAA------GGTGATCAGGGAGCTGGCCGACC 457
|.|||||||| .|| ||||| ||| |.|.|
BPUM_2131___y 807 ACGCACCTATGATGT---CAAACAAGTGGTGA-CAG---------CCATC 843
BSNT_03558 458 --CG---CAGACT--TTTTTTGAGCTTCAGCCATTTTTTGCGAAGAACAT 500
|| |||||| ||.|||||....|||||.|.|||..|.||.||.||
BPUM_2131___y 844 ATCGATTCAGACTCATTCTTTGAAACGCAGCCTTGTTTCTCAAAAAATAT 893
BSNT_03558 501 TGTCATTGGGTTTGCAAGGCTGGGTGAAAAAG------CAATCGGCATCG 544
.||.|..||.|||||.||..| |.||| ||||.||..|.|
BPUM_2131___y 894 CGTTACAGGATTTGCCAGATT------ACAAGGGGCTTCAATTGGTGTAG 937
BSNT_03558 545 TGGCGAGCCAGCCGAAGCATCTGGCGGGAAGCC-TGACGATTGACGCTGC 593
|.||.|..|||||.|||...|||||.||.|||| |||| .||||.|||||
BPUM_2131___y 938 TAGCCAATCAGCCTAAGGTGCTGGCAGGTAGCCTTGAC-CTTGATGCTGC 986
BSNT_03558 594 TGATAAAGCAGCAAGGTTCATCCGTTTTTGTGACGCATTTGATATCCCGT 643
|||||||||.||.|||||.||.||.|||||.||.||.|||.|.||.|||.
BPUM_2131___y 987 TGATAAAGCGGCTAGGTTTATTCGATTTTGCGATGCGTTTCACATTCCGA 1036
BSNT_03558 644 TGTTGACTGTCGAAGATGTCCCGGGGTTTCTGCCGGGTATTCAGCAAGAG 693
|.||.||..|.|.|||.|||||.||.|||.|.||.||| |..|.||
BPUM_2131___y 1037 TCTTAACGCTTGTAGACGTCCCTGGTTTTTTACCAGGT-----GAGAAAG 1081
BSNT_03558 694 CACAAC-----GGAATCATCAGGCATGGAGCAAAATTATTGTTTGCTTAT 738
|..||| |||||.|||.|.||.||.|||||..|.||.|.|||.||.
BPUM_2131___y 1082 CCGAACATGCGGGAATTATCCGTCACGGTGCAAAGCTTTTATATGCGTAC 1131
BSNT_03558 739 GCTGAAGCGACTGTCCCAAAAGTCACACTCATCATTAGAAAAGCGTACGG 788
|||||||||||.||.||||||.||||..|.||..|.|||||.||||..||
BPUM_2131___y 1132 GCTGAAGCGACCGTTCCAAAAATCACCGTGATTTTAAGAAAGGCGTTTGG 1181
BSNT_03558 789 CGGCGCCTATGTGGCCATGAACAGCAAAGCGATCGGAGCGGACCTTGTGT 838
|||.||.|||||.||.|||||.||.||||...|.||.||.||..||||.|
BPUM_2131___y 1182 CGGTGCGTATGTCGCAATGAATAGTAAAGGTTTAGGCGCTGATTTTGTCT 1231
BSNT_03558 839 TTGCATGGCCGAATGCTGAAATCGCAGTGATGGGTCCAGAAGGTGCGGCA 888
.|||||||||....||.|||||.|..||.||||| |||
BPUM_2131___y 1232 ATGCATGGCCAGCGGCAGAAATTGATGTCATGGG----GAA--------- 1268
BSNT_03558 889 TCGATTTTGTATGAAAAGGAAATCAAAGCTTCA----GCTGACCCGCAA- 933
.|.||| ||.|.|.|||||| .|||| ||| .|.||..|
BPUM_2131___y 1269 --AACTTT---TGCAGACGAAATC----GTTCATCCTGCT-TCGCGTGAG 1308
BSNT_03558 934 ---AAGACGAAACGCGAAAAAACAGCTGAATACAAAAAGCAAAACGCCGG 980
.|||||.| ||.|| |..||..||||| |||
BPUM_2131___y 1309 GTTGAGACGGA--GCCAA---------GTGTATTAAAAG--------CGG 1339
BSNT_03558 981 CCCATACAAAGCGGCCGCTTGTGGAATGGTCGATGACATCATTT---TGC 1027
|.||..||..||.| ||.|.|||| |||| |||
BPUM_2131___y 1340 CTCAGGCAGGGCTG-----------ATAGACGAT------ATTTTCATGC 1372
BSNT_03558 1028 CGGAAGAATCAAGGGGAAAACTGATTCAAGCT--TTTCATATGCTT-GCA 1074
||...|||.|.||.|....|.|.|||| ||| |||.||.||||| |||
BPUM_2131___y 1373 CGTCTGAAACGAGAGAGCGATTAATTC--GCTCATTTGATTTGCTTCGCA 1420
BSNT_03558 1075 CATAAGACAGAAGAGAGACCGAAAAAAAAGCACGGTAACATACCGCTTTA 1124
..|||..||||||.||||||..|||||||||.||.|||||.|||||.||
BPUM_2131___y 1421 -GGAAGGAAGAAGATAGACCGTTAAAAAAGCATGGCAACATGCCGCTATA 1469
BSNT_03558 1125 A 1125
|
BPUM_2131___y 1470 A 1470
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