Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03553 and BPUM_2128
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_03553___yqjG.1.24716.seq
# -bsequence dna-align/BPUM_2128___oxaA2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03553___yqjG-BPUM_2128___oxaA2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03553___yqjG-BPUM_2128___oxaA2.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03553___yqjG
# 2: BPUM_2128___oxaA2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 912
# Identity: 540/912 (59.2%)
# Similarity: 540/912 (59.2%)
# Gaps: 177/912 (19.4%)
# Score: 1518.0
#
#
#=======================================
BSNT_03553___ 1 TTGTTAAAAACATATCAAAAACTTTTGGCTATGGGTATCTTTTTGATCGT 50
||| ||||.|| ||| ||.|..||||..||
BPUM_2128___o 1 TTG---------------AAACGTT----TAT---TAACGATTTGTACG- 27
BSNT_03553___ 51 A--TTATGCTCGGGCAATG-------------CTGCATTTGCAGCGACTA 85
| |||||.| .|||| ||||.|||||||
BPUM_2128___o 28 ACTTTATGTT----TAATGATGATTGCCTCACCTGCTTTTGCAG------ 67
BSNT_03553___ 86 ATCAGGTGGGAGGCCTCAGCAACGTA-------------GGTTTTTTCCA 122
||.||||| || ||||.| ||.||||||||
BPUM_2128___o 68 --CAAGTGGG------CA--AACGAATGCGAGCTCTGATGGGTTTTTCCA 107
BSNT_03553___ 123 CGATTATTTAATCGAACCGTTTTCCGCTCTGCTTAAGGGTGTTGCCGGGC 172
..|||||||..||.|.||.|||||.|..|||.||| .|||.|..||
BPUM_2128___o 108 TCATTATTTTGTCCAGCCTTTTTCGGAGCTGATTA-----TTTGGCTTGC 152
BSNT_03553___ 173 -----TGTTTCACGGAGAATACGGACTCTCTATTATCCTCGTAACCATTA 217
|.||.||.|..||.||.||..|.||.|||||..||||.||..|.|
BPUM_2128___o 153 GAACTTCTTCCATGATGATTATGGTTTATCGATTATGTTCGTGACTTTGA 202
BSNT_03553___ 218 TTGTGCGTATAGTTG-TATTGCCTTTGTTTGTCAATCAGTTCAAAAAACA 266
|.||.|||.| |.|| |.||.|||.|.||||..||.||.||.|||||.||
BPUM_2128___o 203 TCGTCCGTCT-GCTGATTTTCCCTCTTTTTGCGAACCAATTTAAAAAGCA 251
BSNT_03553___ 267 GCGCATCTTCCAAGAGAAAATGGCCGTTATTAAACCTCAGGTTGACAGTA 316
..|..|..|.||.|||||.|||||..|..|.||||||||..|||||...|
BPUM_2128___o 252 AAGAGTGATGCAGGAGAAGATGGCACTGGTGAAACCTCAAATTGACGACA 301
BSNT_03553___ 317 TCCAGGTTAAATTGAAAAAGACGAAGGACCCTGAAAAACAAAAAGAGCTG 366
|.||....||||||||.||.|||||.||.|||||||||||||||||.||.
BPUM_2128___o 302 TTCAAAGCAAATTGAAGAAAACGAAAGAACCTGAAAAACAAAAAGAACTA 351
BSNT_03553___ 367 CAAATGGAAATGATGAAGCTGTATCAAGAGAACAACATCAATCCGCTTGC 416
|||||||||||||||||..|.||..||||||||||..|.||.||.||.||
BPUM_2128___o 352 CAAATGGAAATGATGAAAGTATACAAAGAGAACAATGTGAACCCACTAGC 401
BSNT_03553___ 417 GATGGGCTGTCTTCCAATGCTGATTCAGTCTCCGATTATGATTGGGCTTT 466
.|||||||||||.||.|||||.|||||...|||.|||.|..||||..|||
BPUM_2128___o 402 AATGGGCTGTCTGCCTATGCTAATTCAAATTCCAATTGTTCTTGGCTTTT 451
BSNT_03553___ 467 ATTACGCGATTCGCTCAACACCTGAAATTGCGTCACACTCGTTTCTATGG 516
|.|..|||||.|||||.||||||||.|||||..||||.|||||.||||||
BPUM_2128___o 452 ACTCAGCGATCCGCTCTACACCTGAGATTGCAACACATTCGTTCCTATGG 501
BSNT_03553___ 517 TTCAGTTTAGGGCAATCTGATAT-----TCTC-ATGTCCCTTAGTGCAGG 560
||.|..|||||.|||.|.|||.| ||.| ||.|.| |||||
BPUM_2128___o 502 TTTAACTTAGGACAAACCGATCTATTGGTCGCGATCTTC------GCAGG 545
BSNT_03553___ 561 GATTATGTATTTTGTCCAAGCCTATATCGCTCAAAAACTGAGCGCGAAAT 610
...|||||||||..|.|||...|||.|..|.||||.|.| .|||||
BPUM_2128___o 546 CGCTATGTATTTCTTGCAATTTTATGTTACGCAAAGATT---TGCGAA-- 590
BSNT_03553___ 611 ATTCCGCTGTCCCGCAAAACCCAGCGGCACAG--------------CAAT 646
||..||..|| |||||| |||| |||
BPUM_2128___o 591 -----GCAATCAGGC---ACCCAG----ACAGAGGCTGCGCTAAAACAA- 627
BSNT_03553___ 647 CCGCAAAATTGATGGTGT-TCATCTTCCCTGTAATGATGACGATTTTCTC 695
||||||.|.|||| || |.||.|||||..|.||||||..|.||.|.||
BPUM_2128___o 628 --GCAAAAGTAATGG-GTATGATTTTCCCAATCATGATGCTGTTTATTTC 674
BSNT_03553___ 696 GCTTAATGTTCCGGCAGCCCTTCCCCTGTACTGGTTTACAAGCGGACTGT 745
..|.||||..||.||.||||||||..|.||||||.|.|||||.|||.|.|
BPUM_2128___o 675 AATCAATGCACCCGCTGCCCTTCCTTTATACTGGATGACAAGTGGATTAT 724
BSNT_03553___ 746 TTTTGACAGTGCAAAACATCGTCCTTCAGATGACGCATCAT-----AAAA 790
|..|.|||||.||||..|| |..||...||| |||| ||||
BPUM_2128___o 725 TACTCACAGTCCAAACGAT--TATTTTGAATG-----TCATGTACCAAAA 767
BSNT_03553___ 791 GTAAAAA--AACAGCCGCTCTTACTGAGTC-------------------- 818
.|.|||| ||.|| |||||.|
BPUM_2128___o 768 ATCAAAATCAAAAG---------CTGAGACAAACGACCAAGCGAGCCCAG 808
BSNT_03553___ 819 --GGTGAAATAA 828
|.|| |||||
BPUM_2128___o 809 CTGCTG-AATAA 819
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