Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03552 and BPUM_2127

See Amino acid alignment / Visit BSNT_03552 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:05
# Commandline: needle
#    -asequence dna-align/BSNT_03552___yqzJ.1.24716.seq
#    -bsequence dna-align/BPUM_2127___yqzJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03552___yqzJ-BPUM_2127___yqzJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03552___yqzJ-BPUM_2127___yqzJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03552___yqzJ
# 2: BPUM_2127___yqzJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 319
# Identity:     203/319 (63.6%)
# Similarity:   203/319 (63.6%)
# Gaps:          59/319 (18.5%)
# Score: 642.0
# 
#
#=======================================

BSNT_03552___      1 ATGGATGTGATGACAATGTTTGTGGAATCGATA-----AATGACGTTTTA     45
                                    |||.||     ||.||||     |||||.||.||.
BPUM_2127___y      1 ---------------ATGATT-----ATTGATACATTCAATGAAGTCTTT     30

BSNT_03552___     46 TTCTTAGTCGATTTTTTCACAATTATTCTTCCTGCTCTAACGGCAATCGG     95
                     |||.|.||.||.||.||.||.|||||||||||.||.||.|||||.|||||
BPUM_2127___y     31 TTCCTTGTTGAATTCTTTACGATTATTCTTCCAGCGCTGACGGCCATCGG     80

BSNT_03552___     96 GATTGCATTTCTCTTACGGGAGTGCCGTGTGGGCGAGCA-----ATGGAA    140
                     .|||||.|||.|.|||...||.||.|||.||..|||.||     .||||.
BPUM_2127___y     81 CATTGCTTTTTTATTAAAAGACTGTCGTATGAACGAACACCTCGGTGGAC    130

BSNT_03552___    141 ATCAAAACGAACAGATGAACATCAGACG-GTCTTTCACATT-AACCGAAC    188
                     |||.....|||.||.||       |||| .|||||   ||| ||.|||||
BPUM_2127___y    131 ATCGTTTGGAAGAGTTG-------GACGCATCTTT---ATTGAATCGAAC    170

BSNT_03552___    189 AGACTTTCTTATTATTATATATCATCGCATTACAACTTGGATACGTAAAG    238
                     |||||||||..||||.||||||.|||||||||||||||||||..||||||
BPUM_2127___y    171 AGACTTTCTGTTTATCATATATGATCGCATTACAACTTGGATTAGTAAAG    220

BSNT_03552___    239 TCTTCCGCATGAA---TTCGCCTGTGAACGATGAGGAAGAC-----GCCG    280
                     ||.|.||.|||||   .||..|   .||||||||.||||||     ||  
BPUM_2127___y    221 TCATTCGAATGAAACGATCATC---AAACGATGATGAAGACCATTTGC--    265

BSNT_03552___    281 GTTCTCT-TCTTTTATAA-    297
                      ||| || |||.|.||.| 
BPUM_2127___y    266 -TTC-CTCTCTCTAATTAA    282


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