Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03551 and BPUM_2125
See
Amino acid alignment /
Visit
BSNT_03551 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_03551___yqjH.1.24716.seq
# -bsequence dna-align/BPUM_2125___polY1.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03551___yqjH-BPUM_2125___polY1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03551___yqjH-BPUM_2125___polY1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03551___yqjH
# 2: BPUM_2125___polY1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1302
# Identity: 890/1302 (68.4%)
# Similarity: 890/1302 (68.4%)
# Gaps: 114/1302 ( 8.8%)
# Score: 2737.5
#
#
#=======================================
BSNT_03551___ 1 ATGCC---GGGAAAGAGCCGAATTATTTTCCATATTGATATGAATAGC-T 46
||||| |..||| .||||||||.|||||.||.|||||| || |
BPUM_2125___p 1 ATGCCAATGTCAAA------TATTATTTTTCATATAGACATGAAT-GCGT 43
BSNT_03551___ 47 TTTATGCGTCGGTTGAAATGGCATATGATCCGGCTCTCCG-GGGAAAGCC 95
|||||||....||.||||||||.||||||||..||.|..| |||||| ||
BPUM_2125___p 44 TTTATGCCAATGTAGAAATGGCGTATGATCCTTCTTTGAGAGGGAAA-CC 92
BSNT_03551___ 96 GGTCGCAGTTGCCGGAAACGTAAAAGAGCG-AAAGGGCATTGTGGTAACA 144
..|.||..||..||||||.|..|||||||| |||||| ||||||||.||.
BPUM_2125___p 93 TTTAGCCATTAGCGGAAATGCGAAAGAGCGTAAAGGG-ATTGTGGTGACG 141
BSNT_03551___ 145 TGCAGCTATGAAGCAAGAGCGCGCGGCGTCAAAACAACGATGCCGGTTTG 194
|||||||||||.||||||||||..||.||.||..|..|||||||..|.||
BPUM_2125___p 142 TGCAGCTATGAGGCAAGAGCGCTAGGTGTAAAGCCTCCGATGCCTTTATG 191
BSNT_03551___ 195 GCAAGCGAAGCGCCATTGTCCTGAGCTCATCGTTCTTCCGCCGAACTTTG 244
|.||||||||||.|.||||||.|.|||.||.||.|.|.|.||.||.||||
BPUM_2125___p 192 GGAAGCGAAGCGGCTTTGTCCGGGGCTGATTGTCCGTACACCAAATTTTG 241
BSNT_03551___ 245 ACCGCTATAGAAACTCTTCACGAGCGATGTTTACCATTCTTCGTGAATAT 294
||||.||..|||.|||.||||.||.|||||||||.||.||..|.|||||.
BPUM_2125___p 242 ACCGGTACCGAAGCTCCTCACAAGAGATGTTTACGATACTAAGAGAATAC 291
BSNT_03551___ 295 ACTGACCTGGTGGAGCCTGTCTCTATCGACGAAGGCTATATGGACATGAC 344
|..||..|.||.||.||.||.|||||.|||||.||||||||.|||.|.||
BPUM_2125___p 292 AGCGATTTAGTCGAACCCGTATCTATAGACGAGGGCTATATTGACTTAAC 341
BSNT_03551___ 345 CGATACACCATACAATAGCCG----CGCTCTAGAGACGGCAAAAGAAATC 390
..||||.||||| .|||| |||..|..|.|||||..|.||.||.
BPUM_2125___p 342 GCATACGCCATA----TGCCGAGCACGCGGTGAAAACGGCTCATGATATT 387
BSNT_03551___ 391 CAAAGCAGGCTGCAAAAAGAGCTGCTGCTCCCGTCAAGCATAGGGATTGC 440
||||..|||||...|.|.|||||..||||.||.|||||.||.||.|||||
BPUM_2125___p 388 CAAACGAGGCTTGTAGAGGAGCTTATGCTTCCTTCAAGTATTGGCATTGC 437
BSNT_03551___ 441 GCCGAATAAATTTCTCGCTAAGATGGCGTCTGATATGAAAAAACCGCTTG 490
.||||||||||||.|.||.||.|||||||||.||..|||||||||..|.|
BPUM_2125___p 438 ACCGAATAAATTTTTAGCGAAAATGGCGTCTAATTGGAAAAAACCAATGG 487
BSNT_03551___ 491 GAATTACGATTTTAAG--AAAGAGGCAAGTGCCTGATATCCTGTGGCCGC 538
|.||.||||||||..| ||.||| |.||.||..|.||.||.|||||||
BPUM_2125___p 488 GCATCACGATTTTGCGTAAACGAG--ATGTCCCCCAAATGCTATGGCCGC 535
BSNT_03551___ 539 TTCCTGTTGGAGAGATGCACGGAGTCGG-CAAAAAGACAGCGGAAAAACT 587
|.||.|..||.||.|||||||||||.|| |||||| ||.||.||.|||.|
BPUM_2125___p 536 TGCCAGCGGGTGACATGCACGGAGTGGGACAAAAA-ACGGCAGATAAATT 584
BSNT_03551___ 588 GAAGGGAC--TCGGCATCCATACAATCGGAGAGCTAGCTGCAGCTGATGA 635
||| .|| |.|||||.|||||.||.|.|||..||||...|||..||||
BPUM_2125___p 585 GAA--AACGATTGGCATTCATACCATTGAAGACTTAGCGAAAGCAAATGA 632
BSNT_03551___ 636 ----ACACTCCCTGAAACG-CCTGCTTGGCATAAACGGTCCGCGCCTTAA 680
||||| |||.| ..|.||.|||||.||.||.||| |
BPUM_2125___p 633 GTATACACT-----AAAGGAATTACTGGGCATCAATGGACCG-------A 670
BSNT_03551___ 681 AAATAAAGCAAATGGC--AT--TCACCATG-CGCC--GGTTGACCCGGAG 723
.|.|||||||||.||| || |.|.|||| ||.| .||.|||||.||.
BPUM_2125___p 671 GATTAAAGCAAAAGGCCAATGGTGAACATGACGGCATTGTGGACCCAGAA 720
BSNT_03551___ 724 CGCATTTACGAATTTAAAAGCGTCGGCAACTCATCGACACTTTCCCATGA 773
.|.||.||||||||||||...|||||.||.||.||.||.||..|.|||||
BPUM_2125___p 721 AGAATATACGAATTTAAATCTGTCGGGAATTCGTCAACTCTCCCTCATGA 770
BSNT_03551___ 774 TTCCAGTGATGA---AGAAGAGC-TGTTAGGCGTCTTTAGA-AAGCTTGC 818
||| |||.|| |||.||.| ||| .||||...|.|| |||| ||.
BPUM_2125___p 771 TTC---TGACGATCCAGATGAACTTGT--CGCGTTAATTGATAAGC-TGT 814
BSNT_03551___ 819 CGC-TTCTGTGAGTGCCCGTTTACAGCGCAAGGAAGTCATGGC--TTCGA 865
|.| .|||||||||||..|.|||..|.|.||.||||||||||| .|||
BPUM_2125___p 815 CACAATCTGTGAGTGCAAGGTTAAGGAGAAAAGAAGTCATGGCAAATCG- 863
BSNT_03551___ 866 AGCTTTTTATTATGATTAGATATGCGGATTGGAAAACCATCACAAGAAGC 915
|||..|||||||||||.|.||.||....|||||||..|||||..||||.
BPUM_2125___p 864 -GCTCCTTATTATGATTCGGTACGCAAGCTGGAAAAATATCACGCGAAGT 912
BSNT_03551___ 916 ACCACGCTGAGAAACCCGATTGATCAAAAAAACGACAT-TTTGAAAGAAG 964
..|||.||.|..||.||||..||||..||..|.|||.| |.|| |.|.||
BPUM_2125___p 913 GTCACCCTCACGAATCCGACGGATCGGAAGGAAGACTTATATG-AGGCAG 961
BSNT_03551___ 965 CGGAGCACCTCTTTTTTAAACATTGGAATAAAAATCCTGTCAGGCTGCTT 1014
|...|||..|.||..||||||||||||||.|..|.|||||.||||| |||
BPUM_2125___p 962 CAAGGCAGTTATTCCTTAAACATTGGAATGACCAGCCTGTGAGGCT-CTT 1010
BSNT_03551___ 1015 -GGCATTACCGGAACGGATTTAGTAGAA--AAAGAGCAGGCCTATAAACA 1061
||..|.||.||.||.|||.|.|||||| ||| |||| |||..||||||
BPUM_2125___p 1011 AGGTGTGACGGGCACAGATCTTGTAGAACGAAA-AGCA-GCCGTTAAACA 1058
BSNT_03551___ 1062 GCTCGATTTGTTCAGCTTTAATGAAGATGCGAAGGATGAGCCTATTCAGC 1111
|||.|||||.|||..||.||..||||||||.||.||.||||||.|.||..
BPUM_2125___p 1059 GCTTGATTTATTCTCCTATACAGAAGATGCAAAAGAAGAGCCTCTCCAAA 1108
BSNT_03551___ 1112 AGAT----GATGGAAAAGCTGAATAAAAAGTACGGTACCAA--ACTGATC 1155
..|| ||.||| .||||..|||||||.||.| || |||..||
BPUM_2125___p 1109 CCATTTTAGAAGGA----TTGAAAGAAAAGTATGGGA--AATCACTCGTC 1152
BSNT_03551___ 1156 AGAAAAGGG-------GCAACGTTAAAAAAAGAGGAGAGCAAAACAAAGG 1198
..||.|||| .|||.| ||||| |||||||||||||..|
BPUM_2125___p 1153 CAAAGAGGGATGACCATCAAGG----AAAAA---GAGAGCAAAACAAGTG 1195
BSNT_03551___ 1199 GAACAAGCTTTAATAAAGATTTTTTTCATGATGAAA-AGAAAAGCTGA-- 1245
|||||||.||||||||||||||||||||.||.|||| ||.||| |||
BPUM_2125___p 1196 GAACAAGTTTTAATAAAGATTTTTTTCAGGACGAAAGAGGAAA--TGACT 1243
BSNT_03551___ 1245 -- 1245
BPUM_2125___p 1244 AG 1245
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.