Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01001 and BPUM_2121

See Amino acid alignment / Visit BSNT_01001 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:39
# Commandline: needle
#    -asequence dna-align/BSNT_01001.1.24716.seq
#    -bsequence dna-align/BPUM_2121___ydhM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01001-BPUM_2121___ydhM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01001-BPUM_2121___ydhM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01001
# 2: BPUM_2121___ydhM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 320
# Identity:     205/320 (64.1%)
# Similarity:   205/320 (64.1%)
# Gaps:          49/320 (15.3%)
# Score: 715.0
# 
#
#=======================================

BSNT_01001         1 ---------------------------------ATGTCTACCAGTTTATT     17
                                                      ||||||||.||||||.|
BPUM_2121___y      1 ATGAAACGTATTTTATTAGCATGCAGTTCAGGAATGTCTACAAGTTTACT     50

BSNT_01001        18 GGTGACAAAAATGAAGGAATACGCACAGTCTATCGGTGAGGAAGCAGAGA     67
                     .||.|||||.|||||||...|.||..|.|||||.||.||.||.|||||.|
BPUM_2121___y     51 AGTTACAAAGATGAAGGCTCATGCCGACTCTATAGGGGACGAGGCAGACA    100

BSNT_01001        68 TTTGGGCTGTTGGCCAGGATAAAGCAAAAGAAGACATGAGAAAAGCGGAT    117
                     |||||||.|||||.||.|||.||||.|.|.||||.|||...||.||||||
BPUM_2121___y    101 TTTGGGCAGTTGGGCAAGATCAAGCGAGAAAAGAAATGGCGAATGCGGAT    150

BSNT_01001       118 GCCGTTTTGATCGGTCCGCAAATGAGCTTTCTGAAAAGCGAACTCCAAAA    167
                     |..||.||.||.||.|||||||||||||||.|.|||.|.||.||.|||||
BPUM_2121___y    151 GTTGTGTTAATTGGACCGCAAATGAGCTTTTTAAAAGGGGATCTTCAAAA    200

BSNT_01001       168 AGAAGCGGATCAATACAACATTCGG-------GTTGAAGTCATTGACATG    210
                     ||||||       .||||.||.|||       ||.||.|||||.||.|||
BPUM_2121___y    201 AGAAGC-------AACAAAATACGGGATTGCAGTGGAGGTCATCGATATG    243

BSNT_01001       211 ATGGCCTACGGAATGGCAGATGGGAAAAAAGCGTATGAGCAGGCATTGTC    260
                     ..|||.|||||..|.||.|||||..|||||||||||||.||.||..|.||
BPUM_2121___y    244 CAGGCGTACGGGCTTGCCGATGGACAAAAAGCGTATGAACAAGCTGTTTC    293

BSNT_01001       261 CTTAATGG-TGAATCAATAA    279
                     .||.|||| .||||| .|||
BPUM_2121___y    294 ATTGATGGAGGAATC-GTAA    312


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.