Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01002 and BPUM_2120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:39
# Commandline: needle
# -asequence dna-align/BSNT_01002.1.24716.seq
# -bsequence dna-align/BPUM_2120___ydhN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01002-BPUM_2120___ydhN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01002-BPUM_2120___ydhN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01002
# 2: BPUM_2120___ydhN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 365
# Identity: 149/365 (40.8%)
# Similarity: 149/365 (40.8%)
# Gaps: 181/365 (49.6%)
# Score: 391.5
#
#
#=======================================
BSNT_01002 1 ATGGAACAGATGAAAATCACGAA--TTTAACAGACGAGCAAATCAGTTTT 48
||||||.||| |||..|.|||| ..|.||.||.||.|||.||||||||
BPUM_2120___y 1 ATGGAAAAGA--AAACACTCGAAGGACTCACGGAGGAACAAGTCAGTTTT 48
BSNT_01002 49 CAGCTTATCCTGCACAGTGGCAATGCCCGCAGC----TGCATCATACAAT 94
||..|.||..|.|||||.||.|||||||||||| ||| |.||||
BPUM_2120___y 49 CAATTGATTTTACACAGCGGAAATGCCCGCAGCAAATTGC----TTCAAT 94
BSNT_01002 95 CACTGCGCGCCT--ACAA-----AGAAGGGAACAAG--GATGAGGCGGAT 135
|.|| | |||| |||||| .|||| |||||||| ||
BPUM_2120___y 95 CTCT-------TAAACAATTTCGAGAAGG--TCAAGAAGATGAGGC--AT 133
BSNT_01002 136 GCCCTCATTG--CCAAGGCTG-----AGCAG-----GATTTATCCGCG-- 171
||| |.|| || ||||| |||||| ||
BPUM_2120___y 134 -------TTGGTCTAA---TGAAAGAAGCAGAAGAAGATTTA----CGTC 169
BSNT_01002 172 --GCCCATGACATTCACTTTCAAATGATA---CAAAAGGAATCCGGCTGA 216
||.||||.|||.||.||||||.|..|| |||.|||.|..||| .||
BPUM_2120___y 170 ATGCACATGGCATCCATTTTCAACTCGTACAGCAAGAGGCAGGCGG-GGA 218
BSNT_01002 216 -------------------------------------------------- 216
BPUM_2120___y 219 GAAAACACCTTTCTCCTTATTGCTCATGCACGCAGAAGACCACTTAATGT 268
BSNT_01002 216 -------------------------------------------------- 216
BPUM_2120___y 269 CGACTATGACGATCAAGGAGCTTGTGGGAGAGCTTCTACCGATTTTCCAA 318
BSNT_01002 216 --------------- 216
BPUM_2120___y 319 TCGCTTAAACAATAA 333
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