Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01003 and BPUM_2119
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:39
# Commandline: needle
# -asequence dna-align/BSNT_01003.1.24716.seq
# -bsequence dna-align/BPUM_2119___ydhO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01003-BPUM_2119___ydhO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01003-BPUM_2119___ydhO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01003
# 2: BPUM_2119___ydhO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1390
# Identity: 581/1390 (41.8%)
# Similarity: 581/1390 (41.8%)
# Gaps: 650/1390 (46.8%)
# Score: 1991.5
#
#
#=======================================
BSNT_01003 1 GTGTTCGAGAAAATCA--GCCAATTCCTTGTTCCAATTGCAGGGAGGTTA 48
.||||.||.|||||.| ||.|.|| |.|||||.|||||.||.||..|.
BPUM_2119___y 1 ATGTTTGATAAAATAAGTGCTATTT--TGGTTCCGATTGCTGGAAGACTG 48
BSNT_01003 49 AACAATAACCGCTATTTGCAAGTG--CTGCGTGATGCATTTATGCTGGCT 96
|||||.||||||||||| |.||| .|.||.|||||.||||||||.||.
BPUM_2119___y 49 AACAACAACCGCTATTT--AGGTGTATTACGGGATGCCTTTATGCTTGCA 96
BSNT_01003 97 TTCCCGCTTACGATATTCGGGTCCATTTTTGTCGTGTTAACGAATTTGCC 146
|||||||||||.||.||.||.||||||.|.||.|||.|||.|||||||||
BPUM_2119___y 97 TTCCCGCTTACTATTTTTGGTTCCATTATGGTTGTGCTAATGAATTTGCC 146
BSNT_01003 147 GTTTCTAAACAAAATCATGA---ACGCCTCAATGCTTACATCGTTTCAGT 193
.|||.||.|.|||||||||| |..||.||.|| .|...|| |.||||
BPUM_2119___y 147 ATTTTTAGATAAAATCATGAGTCAAACCGCACTG--GAAGGCG-TCCAGT 193
BSNT_01003 194 CTCATTTCGGCATTG------CCTCCACG-GCGACTATGGGCATTATGTC 236
|| |||.|| .|.|||.| |||||.||..||||||||..
BPUM_2119___y 194 CT-------GCACTGAATATCGCGCCAAGTGCGACCATCAGCATTATGAG 236
BSNT_01003 237 TGTCTTTGTTGTGTTCGGGATAGGCTATTACCTGTCAAAAAGCTATCAGG 286
|||.||||||||.||.|||||.|||||.||..|.||.|||||||||.|.|
BPUM_2119___y 237 TGTGTTTGTTGTATTTGGGATTGGCTACTATTTATCGAAAAGCTATGATG 286
BSNT_01003 287 TCGAAGCTGTATTTGGCGGAGCGATCGCTTTGGTCTCCTTTTTGCTCTTA 336
|.|||||||||||||||||.|.|||.||.||.|.|||.||..|.||..|.
BPUM_2119___y 287 TGGAAGCTGTATTTGGCGGCGTGATTGCATTAGCCTCTTTCCTACTTCTG 336
BSNT_01003 337 ACGCCATTTATCGTTCAGCCGGAAACAGGAGATG------CCGTTACAGG 380
||.||||||.| ||..|||..||.||.|| |..||.||||
BPUM_2119___y 337 ACACCATTTTT------GCTAGAACAAGAAGGTGGTGCATCTATTGCAGG 380
BSNT_01003 381 GGTTATTCCGGTCGACCGTCTCGGTGCAAAAGGGATGTTTCTTGGGATGA 430
.||.|||||.|||||.|||.|.||.|||||.||||||||.|||||.||||
BPUM_2119___y 381 CGTAATTCCAGTCGATCGTTTAGGAGCAAAGGGGATGTTCCTTGGAATGA 430
BSNT_01003 431 TTAC-GGCATTTCTTTCTGGTGAAATTTACAGAAGAATCGTT-------- 471
|.|| ||| |||.|.||||.|||||||| ||||||
BPUM_2119___y 431 TCACAGGC-TTTTTGTCTGCTGAAATTT--------ATCGTTATTTTGTC 471
BSNT_01003 472 CAAAA-AAACCTGACAATCAAAATGCCAGC-CGGCGTTCCGCCTGCTGTA 519
||||| |||..||.| |||||.||||| || .||.||||||||.|||||.
BPUM_2119___y 472 CAAAAGAAATTTGTC-ATCAATATGCC-GCAAGGAGTTCCGCCAGCTGTT 519
BSNT_01003 520 GCAAAATCATTCGCCGCACTTATTCCGGCT--TTT----ATCACATTGAC 563
.||||.||.||.||.|||||.||.|||||| ||| .||||| ||
BPUM_2119___y 520 TCAAAGTCTTTTGCTGCACTCATCCCGGCTACTTTGACACTCACA---AC 566
BSNT_01003 564 CGTATTTTTGCTGATTAACGTAATGGTGACTCTGTTTTTTAAAACAAATA 613
| |||||.|||||.||..|.||..|.||.|.....||.||||||||||
BPUM_2119___y 567 C---TTTTTACTGATCAATATCATCATTACACAAGGCTTCAAAACAAATA 613
BSNT_01003 614 TGCACGACGTTATTTATCACGCGATTCAGGCTCCGCTTGTCGGACTTGGA 663
||||.|||.|.||||||||.|||||||||||.|||||||||||.||||||
BPUM_2119___y 614 TGCATGACCTGATTTATCATGCGATTCAGGCACCGCTTGTCGGTCTTGGA 663
BSNT_01003 664 AGCGGTATCATTCCAACGCTGATTGCCGTGTTTTTCATACAAATTCTTTG 713
||||||||||||||.||..|.||.||.||.||.||.||||||||||||||
BPUM_2119___y 664 AGCGGTATCATTCCGACCTTAATCGCTGTTTTCTTTATACAAATTCTTTG 713
BSNT_01003 714 GTTTTTCGGACTGCATGGACAGATCATTATCAACTCCGTGATGGACCCGA 763
|||.||.||.||.||.|||||.||.|||||||||||.||.||||||||.|
BPUM_2119___y 714 GTTCTTTGGGCTTCACGGACAAATTATTATCAACTCTGTCATGGACCCCA 763
BSNT_01003 764 TTTGGAATACACTGCAGTAG------------------------------ 783
|||||||||| ||.|
BPUM_2119___y 764 TTTGGAATAC------GTTGTCCATTCAAAACCTTGAAAGCTATACAAAA 807
BSNT_01003 783 -------------------------------------------------- 783
BPUM_2119___y 808 ACGGGTGAGGTTCCGAATATCATCAGTAAGCAGTTTATCGAAATTTATAC 857
BSNT_01003 783 -------------------------------------------------- 783
BPUM_2119___y 858 GGTTGGTATGGGCGGAACCGGTATGACGCTAGCCGTTGTGTTTACGATTT 907
BSNT_01003 783 -------------------------------------------------- 783
BPUM_2119___y 908 TAATTTTCCTGAAAAGTAAGCAATTAAAACAAGTAGCAAAGCTTGGCTTA 957
BSNT_01003 783 -------------------------------------------------- 783
BPUM_2119___y 958 GGACCAGGATTATTTAACGTCAATGAACCGATTATTTTCGGTTTACCGAT 1007
BSNT_01003 783 -------------------------------------------------- 783
BPUM_2119___y 1008 TGTCATGAACCCGCTTATTCTCATTCCATGGATTTTGGCACCCATGGTTA 1057
BSNT_01003 783 -------------------------------------------------- 783
BPUM_2119___y 1058 TTACATGTATTTCTTATTTTGCGATGGCATCAGGCATTGTACCGCCGCCG 1107
BSNT_01003 783 -------------------------------------------------- 783
BPUM_2119___y 1108 ACGGGCGTAAATATTCCTTGGACAGTGCCGATCTTTATAAGTGGAATAAT 1157
BSNT_01003 783 -------------------------------------------------- 783
BPUM_2119___y 1158 GGCAACCAATTCACTAGCGGGTGGTCTGCTTCAGCTGTTTAACCTGATGA 1207
BSNT_01003 783 -------------------------------------------------- 783
BPUM_2119___y 1208 TCGTGTTTGTTATTTGGTTCCCATTCCTGAAGTTTATTGACCGTATGAAT 1257
BSNT_01003 783 -------------------------------------------------- 783
BPUM_2119___y 1258 GTGAAAAATGAAAAAATAACCACAACGGAAAAAACAAAGACAACCAACAT 1307
BSNT_01003 783 ---------------------------------------- 783
BPUM_2119___y 1308 CAAAGGTGAAGGAGACTCAATACATGTCGATGGAAAATAA 1347
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