Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01003 and BPUM_2119

See Amino acid alignment / Visit BSNT_01003 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:39
# Commandline: needle
#    -asequence dna-align/BSNT_01003.1.24716.seq
#    -bsequence dna-align/BPUM_2119___ydhO.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01003-BPUM_2119___ydhO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01003-BPUM_2119___ydhO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01003
# 2: BPUM_2119___ydhO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1390
# Identity:     581/1390 (41.8%)
# Similarity:   581/1390 (41.8%)
# Gaps:         650/1390 (46.8%)
# Score: 1991.5
# 
#
#=======================================

BSNT_01003         1 GTGTTCGAGAAAATCA--GCCAATTCCTTGTTCCAATTGCAGGGAGGTTA     48
                     .||||.||.|||||.|  ||.|.||  |.|||||.|||||.||.||..|.
BPUM_2119___y      1 ATGTTTGATAAAATAAGTGCTATTT--TGGTTCCGATTGCTGGAAGACTG     48

BSNT_01003        49 AACAATAACCGCTATTTGCAAGTG--CTGCGTGATGCATTTATGCTGGCT     96
                     |||||.|||||||||||  |.|||  .|.||.|||||.||||||||.||.
BPUM_2119___y     49 AACAACAACCGCTATTT--AGGTGTATTACGGGATGCCTTTATGCTTGCA     96

BSNT_01003        97 TTCCCGCTTACGATATTCGGGTCCATTTTTGTCGTGTTAACGAATTTGCC    146
                     |||||||||||.||.||.||.||||||.|.||.|||.|||.|||||||||
BPUM_2119___y     97 TTCCCGCTTACTATTTTTGGTTCCATTATGGTTGTGCTAATGAATTTGCC    146

BSNT_01003       147 GTTTCTAAACAAAATCATGA---ACGCCTCAATGCTTACATCGTTTCAGT    193
                     .|||.||.|.||||||||||   |..||.||.||  .|...|| |.||||
BPUM_2119___y    147 ATTTTTAGATAAAATCATGAGTCAAACCGCACTG--GAAGGCG-TCCAGT    193

BSNT_01003       194 CTCATTTCGGCATTG------CCTCCACG-GCGACTATGGGCATTATGTC    236
                     ||       |||.||      .|.|||.| |||||.||..||||||||..
BPUM_2119___y    194 CT-------GCACTGAATATCGCGCCAAGTGCGACCATCAGCATTATGAG    236

BSNT_01003       237 TGTCTTTGTTGTGTTCGGGATAGGCTATTACCTGTCAAAAAGCTATCAGG    286
                     |||.||||||||.||.|||||.|||||.||..|.||.|||||||||.|.|
BPUM_2119___y    237 TGTGTTTGTTGTATTTGGGATTGGCTACTATTTATCGAAAAGCTATGATG    286

BSNT_01003       287 TCGAAGCTGTATTTGGCGGAGCGATCGCTTTGGTCTCCTTTTTGCTCTTA    336
                     |.|||||||||||||||||.|.|||.||.||.|.|||.||..|.||..|.
BPUM_2119___y    287 TGGAAGCTGTATTTGGCGGCGTGATTGCATTAGCCTCTTTCCTACTTCTG    336

BSNT_01003       337 ACGCCATTTATCGTTCAGCCGGAAACAGGAGATG------CCGTTACAGG    380
                     ||.||||||.|      ||..|||..||.||.||      |..||.||||
BPUM_2119___y    337 ACACCATTTTT------GCTAGAACAAGAAGGTGGTGCATCTATTGCAGG    380

BSNT_01003       381 GGTTATTCCGGTCGACCGTCTCGGTGCAAAAGGGATGTTTCTTGGGATGA    430
                     .||.|||||.|||||.|||.|.||.|||||.||||||||.|||||.||||
BPUM_2119___y    381 CGTAATTCCAGTCGATCGTTTAGGAGCAAAGGGGATGTTCCTTGGAATGA    430

BSNT_01003       431 TTAC-GGCATTTCTTTCTGGTGAAATTTACAGAAGAATCGTT--------    471
                     |.|| ||| |||.|.||||.||||||||        ||||||        
BPUM_2119___y    431 TCACAGGC-TTTTTGTCTGCTGAAATTT--------ATCGTTATTTTGTC    471

BSNT_01003       472 CAAAA-AAACCTGACAATCAAAATGCCAGC-CGGCGTTCCGCCTGCTGTA    519
                     ||||| |||..||.| |||||.||||| || .||.||||||||.|||||.
BPUM_2119___y    472 CAAAAGAAATTTGTC-ATCAATATGCC-GCAAGGAGTTCCGCCAGCTGTT    519

BSNT_01003       520 GCAAAATCATTCGCCGCACTTATTCCGGCT--TTT----ATCACATTGAC    563
                     .||||.||.||.||.|||||.||.||||||  |||    .|||||   ||
BPUM_2119___y    520 TCAAAGTCTTTTGCTGCACTCATCCCGGCTACTTTGACACTCACA---AC    566

BSNT_01003       564 CGTATTTTTGCTGATTAACGTAATGGTGACTCTGTTTTTTAAAACAAATA    613
                     |   |||||.|||||.||..|.||..|.||.|.....||.||||||||||
BPUM_2119___y    567 C---TTTTTACTGATCAATATCATCATTACACAAGGCTTCAAAACAAATA    613

BSNT_01003       614 TGCACGACGTTATTTATCACGCGATTCAGGCTCCGCTTGTCGGACTTGGA    663
                     ||||.|||.|.||||||||.|||||||||||.|||||||||||.||||||
BPUM_2119___y    614 TGCATGACCTGATTTATCATGCGATTCAGGCACCGCTTGTCGGTCTTGGA    663

BSNT_01003       664 AGCGGTATCATTCCAACGCTGATTGCCGTGTTTTTCATACAAATTCTTTG    713
                     ||||||||||||||.||..|.||.||.||.||.||.||||||||||||||
BPUM_2119___y    664 AGCGGTATCATTCCGACCTTAATCGCTGTTTTCTTTATACAAATTCTTTG    713

BSNT_01003       714 GTTTTTCGGACTGCATGGACAGATCATTATCAACTCCGTGATGGACCCGA    763
                     |||.||.||.||.||.|||||.||.|||||||||||.||.||||||||.|
BPUM_2119___y    714 GTTCTTTGGGCTTCACGGACAAATTATTATCAACTCTGTCATGGACCCCA    763

BSNT_01003       764 TTTGGAATACACTGCAGTAG------------------------------    783
                     ||||||||||      ||.|                              
BPUM_2119___y    764 TTTGGAATAC------GTTGTCCATTCAAAACCTTGAAAGCTATACAAAA    807

BSNT_01003       783 --------------------------------------------------    783
                                                                       
BPUM_2119___y    808 ACGGGTGAGGTTCCGAATATCATCAGTAAGCAGTTTATCGAAATTTATAC    857

BSNT_01003       783 --------------------------------------------------    783
                                                                       
BPUM_2119___y    858 GGTTGGTATGGGCGGAACCGGTATGACGCTAGCCGTTGTGTTTACGATTT    907

BSNT_01003       783 --------------------------------------------------    783
                                                                       
BPUM_2119___y    908 TAATTTTCCTGAAAAGTAAGCAATTAAAACAAGTAGCAAAGCTTGGCTTA    957

BSNT_01003       783 --------------------------------------------------    783
                                                                       
BPUM_2119___y    958 GGACCAGGATTATTTAACGTCAATGAACCGATTATTTTCGGTTTACCGAT   1007

BSNT_01003       783 --------------------------------------------------    783
                                                                       
BPUM_2119___y   1008 TGTCATGAACCCGCTTATTCTCATTCCATGGATTTTGGCACCCATGGTTA   1057

BSNT_01003       783 --------------------------------------------------    783
                                                                       
BPUM_2119___y   1058 TTACATGTATTTCTTATTTTGCGATGGCATCAGGCATTGTACCGCCGCCG   1107

BSNT_01003       783 --------------------------------------------------    783
                                                                       
BPUM_2119___y   1108 ACGGGCGTAAATATTCCTTGGACAGTGCCGATCTTTATAAGTGGAATAAT   1157

BSNT_01003       783 --------------------------------------------------    783
                                                                       
BPUM_2119___y   1158 GGCAACCAATTCACTAGCGGGTGGTCTGCTTCAGCTGTTTAACCTGATGA   1207

BSNT_01003       783 --------------------------------------------------    783
                                                                       
BPUM_2119___y   1208 TCGTGTTTGTTATTTGGTTCCCATTCCTGAAGTTTATTGACCGTATGAAT   1257

BSNT_01003       783 --------------------------------------------------    783
                                                                       
BPUM_2119___y   1258 GTGAAAAATGAAAAAATAACCACAACGGAAAAAACAAAGACAACCAACAT   1307

BSNT_01003       783 ----------------------------------------    783
                                                             
BPUM_2119___y   1308 CAAAGGTGAAGGAGACTCAATACATGTCGATGGAAAATAA   1347


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