Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01007 and BPUM_2118
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:40
# Commandline: needle
# -asequence dna-align/BSNT_01007___ydhP.1.24716.seq
# -bsequence dna-align/BPUM_2118___ydhP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01007___ydhP-BPUM_2118___ydhP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01007___ydhP-BPUM_2118___ydhP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01007___ydhP
# 2: BPUM_2118___ydhP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1436
# Identity: 1044/1436 (72.7%)
# Similarity: 1044/1436 (72.7%)
# Gaps: 67/1436 ( 4.7%)
# Score: 3566.5
#
#
#=======================================
BSNT_01007___ 1 ------TTGGCACA-AACAGAACA---ATATCGTTTTCCA-AAGGATTTT 39
.|||.|.| |||| |||| ||||...|||||| |||| |||.
BPUM_2118___y 1 ATGTCGATGGAAAATAACA-AACAATCATATACATTTCCAGAAGG-TTTC 48
BSNT_01007___ 40 TGGTGGGGATCATCGGCTTCAGCAACACAAACGGAGGGTGCCGCCGACAG 89
|||||||||||.||.||.||.||.||.|||||.||.|||..||.|....|
BPUM_2118___y 49 TGGTGGGGATCTTCTGCCTCTGCTACGCAAACAGAAGGTAGCGTCCCTGG 98
BSNT_01007___ 90 AGACGGAAAAGGCCAGAATATATGGGATTATTGGTTTGAAAAAGAACCGC 139
.|||||||||||.|.||||||.||||||.||||||||||..||||.|||.
BPUM_2118___y 99 TGACGGAAAAGGGCCGAATATTTGGGATCATTGGTTTGAGCAAGAGCCGA 148
BSNT_01007___ 140 ATCGTTTTTTTGATCATGTCGGCCCCGCA-GACACATCCCAATTTTAC-G 187
.|||||||||||||...||.|| .|||.| |..||||||||||||||| |
BPUM_2118___y 149 CTCGTTTTTTTGATGGCGTAGG-ACCGAACGTGACATCCCAATTTTACAG 197
BSNT_01007___ 188 ACAACTATAAAGAAGATATCAGGCTGATGAAGGAGCTTGGCCACAACTCG 237
| ||.||||||||.|||||..|..|||||||.||..||||.|||||.||.
BPUM_2118___y 198 A-AAATATAAAGAGGATATTCGTTTGATGAAAGAAATTGGGCACAATTCA 246
BSNT_01007___ 238 TTCCGGATGTCGATTTCCTGGTCACGATTAATACCAAACGGAACGGGCGA 287
|||||..||||.|||||.||||||||..|..||||..|.||.||.||.|.
BPUM_2118___y 247 TTCCGATTGTCCATTTCATGGTCACGTCTCTTACCTGAAGGGACAGGTGC 296
BSNT_01007___ 288 GATCAACGATAAAGCCGCAAATTTCTATAACAATGTCATTGATGAGTTAA 337
|.|.||.||..||||.|.|..|||.||.||..||||.||..||||..|.|
BPUM_2118___y 297 GGTAAATGAAGAAGCAGTATCTTTTTACAATGATGTGATCAATGAACTGA 346
BSNT_01007___ 338 TCGCTAACGGAATTGAACCTTTTGTCAATTTGTTTCATTTCGATATGCCG 387
|.||..|.|..||||||||.|||||.||..|||..|||||||||||||||
BPUM_2118___y 347 TTGCACATGATATTGAACCGTTTGTGAACCTGTACCATTTCGATATGCCG 396
BSNT_01007___ 388 ATAGCGCTTCA--AAAAATCGGTGGCTGGGTCAATAGAGAGACGGTTGAC 435
||.|||||.|| ||||| ||.|||||||||||||||.||..|||.||.
BPUM_2118___y 397 ATGGCGCTGCAGGAAAAA--GGCGGCTGGGTCAATAGACAGGTGGTAGAT 444
BSNT_01007___ 436 GCGTATGAAAACTATGCAAGAACT-TGCTTCCGTTTGTTTGGCGGCCGGG 484
|..||||..|.|||||| .|||.| |||||.|..||.|||||||.|||||
BPUM_2118___y 445 GATTATGTGAGCTATGC-GGAATTGTGCTTTCAATTATTTGGCGACCGGG 493
BSNT_01007___ 485 TGAAAAAATGGTTTACGCATAATGAACCAATCGTTCCCGTAGAAGGCGGA 534
||||||||||||||||.|||||||||||.||||||||.|||||.||||||
BPUM_2118___y 494 TGAAAAAATGGTTTACTCATAATGAACCGATCGTTCCTGTAGAGGGCGGA 543
BSNT_01007___ 535 TACCTATATG-AT---TTTCATTATCCAAACAAGGTCGACTTTAAAGAGG 580
|||||| || |||||||||||.|||.|.|||||.||..||.|||
BPUM_2118___y 544 ----TATATGTATAGCTTTCATTATCCGAACGAAGTCGATTTCCAAAAGG 589
BSNT_01007___ 581 CCGTCCAGGTTGGATTTCATACGA--TGCTATCAAGTGCCCGCGCCATTC 628
|.||.|||||.||.|.|||| || |..||||||.|||....||.||..
BPUM_2118___y 590 CTGTACAGGTCGGTTATCAT--GAACTTTTATCAAATGCGAAGGCGATAG 637
BSNT_01007___ 629 AGGCTTACAGGGAGATGAAGCAGGACGGAAAAATCGGCATCATCTTAAAT 678
.||||||.|...||.|||||||.|||||.||.||.|||||||||.|.|||
BPUM_2118___y 638 CGGCTTATAAAAAGCTGAAGCAAGACGGTAAGATTGGCATCATCCTCAAT 687
BSNT_01007___ 679 TTGACCCCTTCATACCCGAGAAG-CAGCCATCCGGCG-GATGTGAAAGCC 726
.|.|||||.||.||.|||||.|| ||| .|||| ||| ||.||..||||.
BPUM_2118___y 688 CTTACCCCATCTTATCCGAGGAGCCAG-AATCC-GCGCGACGTAGAAGCA 735
BSNT_01007___ 727 GGGGAAATCGCAGACGCGTTTTTTAACAGATCTTTTTTAGACCCATCTGT 776
|..||.||.||.||.||.||.||||||.|.||.||..||||.||..|.||
BPUM_2118___y 736 GCTGAGATGGCGGATGCTTTCTTTAACCGGTCCTTCCTAGATCCTGCGGT 785
BSNT_01007___ 777 CAAAGGCGA-ATTTCCCA-AAGAGCTGGTTGACATTTTGAAGCATGAAGG 824
.|| |.|| |||||||| ||.|.||.||.||..|.||.|||.|.|||||
BPUM_2118___y 786 GAA--GGGACATTTCCCAGAAAAACTAGTAGAGGTCTTAAAGAAGGAAGG 833
BSNT_01007___ 825 CTTTATGCCAGATTA--CAACGCTGAA---GATCTTGACATCATCAAAAA 869
|||||||||| |.|| ||| ||| ||||||||..||||..||.|
BPUM_2118___y 834 CTTTATGCCA-AGTATGCAA----GAAGGGGATCTTGAGCTCATTCAAGA 878
BSNT_01007___ 870 GAACACGGTTGACCTGTTGGGAGTGAATTATTACCAGCCGAGACGTGTGA 919
|||.||.||.|||||..|.|||.|.||.|||||.|||||.|||.|.||||
BPUM_2118___y 879 GAATACCGTCGACCTCCTTGGAATCAACTATTATCAGCCAAGAAGAGTGA 928
BSNT_01007___ 920 AAGCGAAAGAACATCTTCCGAATCCCGACGCTCCTTTTTTACCGGA-CAG 968
||||||||||.|||.|.|||.||||..|.||.||.|||.|.||..| ||
BPUM_2118___y 929 AAGCGAAAGAGCATATGCCGCATCCAAATGCACCATTTATGCCAAATCA- 977
BSNT_01007___ 969 GTATTTTGATCCCTACGTCATGCCGGGCCGCAAAATGAATCCGCATCGAG 1018
.|||||||||.|.|..|.|||||||||..|.|||||||||..|.||||.|
BPUM_2118___y 978 TTATTTTGATGCATTTGACATGCCGGGAAGAAAAATGAATGTGTATCGCG 1027
BSNT_01007___ 1019 GCTGGGAGATCTATGAAAAAGGCGTTTATGATATTTTGATCAATTTAAAA 1068
|||||||.|||||||||||||||.||||||||||.|||| .||||
BPUM_2118___y 1028 GCTGGGAAATCTATGAAAAAGGCATTTATGATATATTGA------AAAAA 1071
BSNT_01007___ 1069 G---AAA---ACTACGGCAACATCGAGTGTTTTATCTCTGAAAACGGTAT 1112
| ||| ||||.|..||.||.||.||.|||||.||||||||.||.||
BPUM_2118___y 1072 GTCCAAACAGACTATGATAATATTGAATGCTTTATTTCTGAAAATGGAAT 1121
BSNT_01007___ 1113 GGGGGTTGAAGGTGAAGAGCGCTTCAGGGATGAACAAGGCATCATTCAAG 1162
|||.||.|||||.||||||||.||.|.|||||||.||||.||.|||||.|
BPUM_2118___y 1122 GGGTGTCGAAGGAGAAGAGCGGTTTAAGGATGAAGAAGGAATGATTCATG 1171
BSNT_01007___ 1163 ATGATTACCGGATTGAATTTATAAAAGAGCACCTCAAATGGATTCACCGC 1212
|.||||||||.|||||.|||||....|||||.||.||||||.||||.|..
BPUM_2118___y 1172 ACGATTACCGCATTGATTTTATTGCTGAGCATCTTAAATGGGTTCATCAA 1221
BSNT_01007___ 1213 GCCATACAGGAAGGATCAAACGTAAAAGGTTATCACTTATGGACGTTCAT 1262
|||||..|.||||||...||.||||||||||||||..|.||||||||.||
BPUM_2118___y 1222 GCCATCAAAGAAGGAAGCAATGTAAAAGGTTATCATCTGTGGACGTTTAT 1271
BSNT_01007___ 1263 GGACAACTGGTCTTGGACAAATGCCTATAAAAACCGATACGGATTTGTAT 1312
|||.||||||||.|||.|.|||||.||||||||.||.||.||||||||.|
BPUM_2118___y 1272 GGATAACTGGTCATGGTCGAATGCTTATAAAAATCGCTATGGATTTGTCT 1321
BSNT_01007___ 1313 CAGTCAATCTTGAGAAAGACGGAGAAAGAACCGTCAAAAAGAGCGGAAAA 1362
||||..|.|||.|..||||||||.||.|.|||.|.||.||.||||||.|.
BPUM_2118___y 1322 CAGTTGACCTTCAAGAAGACGGAAAACGTACCATTAAGAAAAGCGGATAC 1371
BSNT_01007___ 1363 TGGTTCAAAAAGGTTGCTGAGCATAGCGGTTTCTAG 1398
|||||..||..|||..|.||..|||.||||||.||.
BPUM_2118___y 1372 TGGTTTCAATCGGTATCAGAAAATAACGGTTTTTAA 1407
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