Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03549 and BPUM_2116
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_03549___zwf.1.24716.seq
# -bsequence dna-align/BPUM_2116___zwf.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03549___zwf-BPUM_2116___zwf.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03549___zwf-BPUM_2116___zwf.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03549___zwf
# 2: BPUM_2116___zwf
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1505
# Identity: 1121/1505 (74.5%)
# Similarity: 1121/1505 (74.5%)
# Gaps: 64/1505 ( 4.3%)
# Score: 4036.5
#
#
#=======================================
BSNT_03549___ 1 GTGAAAAC--AAACCAACAA-CCAAAAGCAGTAATTGTCATATTCGGTGC 47
|||||.|| ||||.||||| |||||||||||.||||||||.||.||.||
BPUM_2116___z 1 GTGAATACAGAAACTAACAATCCAAAAGCAGTCATTGTCATTTTTGGCGC 50
BSNT_03549___ 48 AACTGGAGATTTAGCAAAACGAAAATTGTATCCGTCTATTCACCGTTTAT 97
|||.||||||.|.||.|||||.||..|.||.||.|||||.||..|..|.|
BPUM_2116___z 51 AACAGGAGATCTTGCCAAACGCAAGCTCTACCCTTCTATACATAGACTTT 100
BSNT_03549___ 98 ATCAAAACGGACAAATCGGAGAAGAGTTTGCAGTGGTAGGAGTTGGAAGA 147
||||.|.||||.||.|.||.||..|.||.||.|||||.||.||||||.|.
BPUM_2116___z 101 ATCATAGCGGAAAACTTGGCGATCAATTCGCCGTGGTCGGTGTTGGACGC 150
BSNT_03549___ 148 AGACCTTGGTCTAATGAGGATCTTCGCCAAACT---GTTAAAACATCCAT 194
.|.||.||||||.|||||||.||.|| |.|| ||.|||..|||..|
BPUM_2116___z 151 CGTCCGTGGTCTCATGAGGACCTACG---AGCTGTGGTGAAAGAATCTGT 197
BSNT_03549___ 195 TTC--CTCAT-CTGCAGATAAGC--ATATAGATGATTTCACGTCTCATTT 239
||| ||.|| .||||| |||| |.|||||.||.||||..||.|||||
BPUM_2116___z 198 TTCTTCTGATGATGCAG--AAGCGAAAATAGAGGAATTCAGTTCACATTT 245
BSNT_03549___ 240 TTACTATCACCCGTTTGACGTGACAAACCCTGGTTCTTATCAAGAGCTAA 289
|||.||||||...||||||||..|.|||||||.|||.||||||..|||.|
BPUM_2116___z 246 TTATTATCACGATTTTGACGTATCTAACCCTGCTTCCTATCAATCGCTTA 295
BSNT_03549___ 290 ACGTATTGCTTAACCAG--CTGGAAGA----TACA-TATCAAATTCCTAA 332
||..|.|.|| |.||| ||.||||| |||| |||| ||.||
BPUM_2116___z 296 ACACACTTCT--AGCAGGCCTTGAAGACACGTACAGTATC-----CCAAA 338
BSNT_03549___ 333 CAACAGAATGTTCTACTTGGCAATGGCTCCTGAATTCTTCGGAACGATTG 382
||||.|.||||||||.||.||.|||||.||.|||||||||||||||||||
BPUM_2116___z 339 CAACCGGATGTTCTATTTAGCGATGGCACCGGAATTCTTCGGAACGATTG 388
BSNT_03549___ 383 CAAAAACATTAAAATCAGAGGGTGTAACAGCTACAACCGGCTGGTCCCGC 432
||||.....|||||...||.||.|||.||...|||||.||||||||..|.
BPUM_2116___z 389 CAAAGTTCCTAAAAAGTGAAGGCGTATCAAAAACAACTGGCTGGTCAAGA 438
BSNT_03549___ 433 CTTGTCATCGAAAAACCATTCGGCCATGATCTGCCAAGCGC---ACAGGC 479
||||||||.|||||||||||.||||||||..|||||||.|| |.||
BPUM_2116___z 439 CTTGTCATTGAAAAACCATTTGGCCATGACTTGCCAAGTGCGAAAAAG-- 486
BSNT_03549___ 480 ATTAAATAAAGAAATCCGCGAAGCATTTACGGAAGATCAAATTTACAGAA 529
||||||.|||||||.||.||.|||||..|.||||||||||||||..|.|
BPUM_2116___z 487 -TTAAATGAAGAAATTCGGGATGCATTCTCTGAAGATCAAATTTATCGTA 535
BSNT_03549___ 530 TCGACCATTATCTAGGCAAACAAATGGTTCAGAACATTGAAGTGATTCGA 579
|.|||||.||.||.||.|||||||||||.||.||||||||.||.||.||.
BPUM_2116___z 536 TTGACCACTACCTTGGTAAACAAATGGTGCAAAACATTGAGGTCATCCGT 585
BSNT_03549___ 580 TTTGCCAATGCGATTTTCGAACCGCTTTGGACAAACCGCTACATTTCAAA 629
|||||.|||||.||.||.|||||.||||||||||||||.||.||.|||||
BPUM_2116___z 586 TTTGCAAATGCCATCTTTGAACCACTTTGGACAAACCGATATATCTCAAA 635
BSNT_03549___ 630 CATTCAAATCACATCTAGCGAATCACTAGGCGTTGAAGACCGCGCAAGAT 679
|||||||||.||||||||.||||||.||||.|||||||||||.||..|.|
BPUM_2116___z 636 CATTCAAATTACATCTAGTGAATCATTAGGGGTTGAAGACCGGGCCCGCT 685
BSNT_03549___ 680 ATTACGAAAAATCAGGCGCCCTTCGCGACATGGTGCAAAACCATATTATG 729
|||||||||..|||||.||.||..|.||.|||||.|||||||||||..|.
BPUM_2116___z 686 ATTACGAAAGTTCAGGTGCACTAAGAGATATGGTTCAAAACCATATGCTT 735
BSNT_03549___ 730 CAGATGGTTGCCCTTCTTGCAATGGAGCCGCCTATCAAATTGAACACAGA 779
||.||||||||.|||.|.||||||||||||||.||.||..||||.||.||
BPUM_2116___z 736 CAAATGGTTGCACTTTTAGCAATGGAGCCGCCAATTAAGCTGAATACCGA 785
BSNT_03549___ 780 AGAAATCCGCAGCGAAAAAGTGAAGGTGCTGAGAGCACTGCGTCCTATTG 829
.|||||||||||.||||||..|||.|...|..|.||.||.||||||.|..
BPUM_2116___z 786 GGAAATCCGCAGTGAAAAACGGAAAGCATTACGCGCTCTTCGTCCTTTCT 835
BSNT_03549___ 830 CAAAAGACGAAGTGGATGAATACTTTGTGCGCGGACAATATCAAGCTGGT 879
|||||||.||.||.|||.|||.||||||.||||||||.|||.|.||||||
BPUM_2116___z 836 CAAAAGATGAGGTTGATCAATTCTTTGTCCGCGGACAGTATGATGCTGGT 885
BSNT_03549___ 880 GAAATTGACGGT-GTACCGGTTCCTGCTTATACAGATGAAGATAATGTCG 928
....||||.||| ||| .|||||||.|.|||...||.||..|.|||||.|
BPUM_2116___z 886 ACGGTTGATGGTGGTA-TGGTTCCTTCCTATCTTGAAGAGCAAAATGTTG 934
BSNT_03549___ 929 CTCCTGACTCCAATACAGAAACCTTTGTTGCCGGCAAGCTCCTGATCGAC 978
..||..||||.|||||.|||||.|||||||||||.|||||.||.||.||.
BPUM_2116___z 935 ACCCGAACTCAAATACGGAAACATTTGTTGCCGGGAAGCTGCTCATTGAT 984
BSNT_03549___ 979 AACTTCAGATGGGCTGGTGTTCCATTCTACATCAGAACCGGAAAACGAAT 1028
|||||.||||||||.||.||.|||||.|||||..|.||.||||||||..|
BPUM_2116___z 985 AACTTTAGATGGGCAGGCGTGCCATTTTACATTCGTACTGGAAAACGTTT 1034
BSNT_03549___ 1029 GAAAGAAAAG---TCCACAAAAATTGTCGTTCAATTTAAGGACATTCCGA 1075
||||||| ||.||..|.|||||.|||||||||||.||||||||.|
BPUM_2116___z 1035 ---AGAAAAGAAATCTACTCAGATTGTTGTTCAATTTAAAGACATTCCAA 1081
BSNT_03549___ 1076 TGAACCTGTACTACGGTAATGAAAACAACATGAATCCGAACTTGCTTGTC 1125
|||||.|||||||.||.||.|.|||...||||.||||||||||.||.|||
BPUM_2116___z 1082 TGAACTTGTACTATGGGAACGGAAATTCCATGCATCCGAACTTACTCGTC 1131
BSNT_03549___ 1126 ATTCATATTCAGCCTGACGAAGGCATTACGCTTTACTTAAATGCTAAAAA 1175
||||||||||||||.||.|||||.|||||.|||.||.|.||.||....||
BPUM_2116___z 1132 ATTCATATTCAGCCAGATGAAGGTATTACCCTTCACCTGAACGCGCGTAA 1181
BSNT_03549___ 1176 GCTTGGCGGAGCAGCACA--CGCACAGCCAATCAAACTCGATTATTGC-A 1222
|||||..| ||.|.||| .|||.||||.||.||.|||||.||| | |
BPUM_2116___z 1182 GCTTGATG--GCGGTACATTTGCAAAGCCGATTAAGCTCGACTAT--CAA 1227
BSNT_03549___ 1223 GCAATTGCAATGACGA---GTTGAACACCCCTGAAGCATATGAAAAACTC 1269
.||| .|.||.|||| ..||||.||.||.|||||.||||||||.||.
BPUM_2116___z 1228 ACAA--ACTATAACGACATCATGAATACACCAGAAGCCTATGAAAAGCTG 1275
BSNT_03549___ 1270 ATTCACGACTGTCTTCTTGGCGATGCAACAAACTTTGCACACTGGGATGA 1319
|||||.||||||.|.||.||||||||.||.||||||||.|||||||||||
BPUM_2116___z 1276 ATTCATGACTGTTTGCTAGGCGATGCTACGAACTTTGCTCACTGGGATGA 1325
BSNT_03549___ 1320 AGTTGCCCTTTCTTGGAGCTTTGTCGACTCTATTTCTGAAACATGGGCAG 1369
|||.||.||||||||||.|||||||||..|.||||||||||.||||||||
BPUM_2116___z 1326 AGTGGCGCTTTCTTGGAACTTTGTCGATCCGATTTCTGAAAAATGGGCAG 1375
BSNT_03549___ 1370 CAAACAAAACCTTATCTCCTAACTACGAAT----CAGGCTCAATGGGACC 1415
.|||||||||.|||...||.||.| || |.||.||.||||||||
BPUM_2116___z 1376 AAAACAAAACATTAAAACCAAATT----ATCCTGCTGGTTCTATGGGACC 1421
BSNT_03549___ 1416 GAAAGTATCTGATGATCTTTTGGCGAAAGACGGCTTACACTGGTGGAATA 1465
|||||.|.|.|||.|.|||.|.|..|||||.||.|..||.||||||||||
BPUM_2116___z 1422 GAAAGAAGCCGATCAGCTTCTAGAAAAAGATGGGTATCATTGGTGGAATA 1471
BSNT_03549___ 1466 TATAA 1470
|||||
BPUM_2116___z 1472 TATAA 1476
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