Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03547 and BPUM_2115

See Amino acid alignment / Visit BSNT_03547 in genome browser / Return to Orthologue table 
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:04
# Commandline: needle
#    -asequence dna-align/BSNT_03547___rnz.1.24716.seq
#    -bsequence dna-align/BPUM_2115___rnz.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03547___rnz-BPUM_2115___rnz.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03547___rnz-BPUM_2115___rnz.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03547___rnz
# 2: BPUM_2115___rnz
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 989
# Identity:     661/989 (66.8%)
# Similarity:   661/989 (66.8%)
# Gaps:         124/989 (12.5%)
# Score: 2095.5
# 
#
#=======================================

BSNT_03547___      1 GTGGAATTACTTTTTTTAGGGACGGGAGCCGGCATCCCCGCCAAGGCGAG     50
                     .|||||.|.||.||||||||.||.||.||.|||||.||.||.||..|.||
BPUM_2115___r      1 ATGGAACTGCTCTTTTTAGGAACTGGTGCAGGCATTCCTGCGAAAACTAG     50

BSNT_03547___     51 AAACGTCACCTCTGTAGCATTG----AAATTGCTT---GAAGAAAG----     89
                     |||||||||     |.|||.||    |||  ||||   ||||||||    
BPUM_2115___r     51 AAACGTCAC-----TTGCACTGCGCTAAA--GCTTTTAGAAGAAAGAAAA     93

BSNT_03547___     90 GCGTTCGGTATGGCTTTTTGACTGCGGGGAAGCCACACAGCATCAAATTT    139
                     |    |.||.|||||||||||.|||||.|||||.||.|||||||||||.|
BPUM_2115___r     94 G----CAGTGTGGCTTTTTGATTGCGGAGAAGCGACGCAGCATCAAATAT    139

BSNT_03547___    140 TACATACAACGATTAAACCTCGTAAAATAGAGAAAATCTTTATTACACAC    189
                     ||||||||||.||||||||..|.||.||.||.|||||.|||||.||.||.
BPUM_2115___r    140 TACATACAACAATTAAACCGAGAAAGATTGATAAAATTTTTATCACTCAT    189

BSNT_03547___    190 ATGCACGGCGATCATGTATACGGACTTCCGGGGCTTCTGGGGAGCCGTTC    239
                     |||||.||.||||||||||||||.||.||.||.||.||.||.|||.|.||
BPUM_2115___r    190 ATGCATGGTGATCATGTATACGGTCTCCCAGGACTGCTTGGCAGCAGATC    239

BSNT_03547___    240 CTTTCAAGGCGGAGAGGACGAGCTGACAGTGTACGGACCTAAAGGGATCA    289
                     ||||||||||||.|||||.||.||.|||.|.||.||||||||.||.||||
BPUM_2115___r    240 CTTTCAAGGCGGGGAGGATGAACTAACAATCTATGGACCTAAGGGCATCA    289

BSNT_03547___    290 AGGCGTTTATTGAA-ACAAGCCTTGCCGTCACGAAAACCCATTTGACATA    338
                     |.|||||| .|||| .|||..|||.|.|..||..||||.|||||||||||
BPUM_2115___r    290 AAGCGTTT-GTGAACGCAACACTTTCAGCTACACAAACGCATTTGACATA    338

BSNT_03547___    339 TCCGCTTGC-GATCCAGGAAATTGAAGAAGGAATCGTGTTTGAGGACGAT    387
                     |||.| ||| .|||...||.||.||.|||||..||||.|||||.||.|||
BPUM_2115___r    339 TCCAC-TGCATATCATAGAGATAGATGAAGGGGTCGTATTTGAAGATGAT    387

BSNT_03547___    388 CAGTTTATTGT-----CACAG-CG-GTATCT---GTTATTCATGGAGTGG    427
                     ...|||...||     || || || ||||||   |.|||||         
BPUM_2115___r    388 ACCTTTCAAGTAGAAGCA-AGACGAGTATCTCACGGTATTC---------    427

BSNT_03547___    428 AAGCCTTCGGGTACCGTGTGCAG--GAAAAAGACGTACCGGGTTCCTTGA    475
                     .|||.|.|||.||.||.||  ||  ||||||||.|||||.|||.|.||.|
BPUM_2115___r    428 CAGCTTACGGCTATCGGGT--AGTCGAAAAAGATGTACCTGGTGCATTAA    475

BSNT_03547___    476 AGGCTGACGTATTAAAAGAAATGAACATCCCG--------CCCGGACCTG    517
                     |.||.||.|...||||||||||        ||        ||.||||||.
BPUM_2115___r    476 AAGCCGAAGACCTAAAAGAAAT--------CGGTGTAAAACCTGGACCTT    517

BSNT_03547___    518 TATATCAGAAAATCAAAAAAGGCGAAACGGTAACGCTTGAAGACGGACGA    567
                     |.||||||||..|.|||||.||.||.||.||.|||||.|||||.|||.||
BPUM_2115___r    518 TGTATCAGAAGTTAAAAAATGGGGATACCGTGACGCTCGAAGATGGAAGA    567

BSNT_03547___    568 ATCATCAATGGGAATGATTTTCTGGAGCCTCCT-AAAAAGGGAAGATCTG    616
                     |||||..||||.|..||||.|.||||.||.||| |||||||||..||| |
BPUM_2115___r    568 ATCATTGATGGAACCGATTATTTGGAACCCCCTAAAAAAGGGAGAATC-G    616

BSNT_03547___    617 TTGTGTTCTCCGGTGATACGAGAGTAAGTGACAAACTAA-AAGAGCTTGC    665
                     |||..||.||.||.|||||..|..||.|.||.||..||| ||| ||||||
BPUM_2115___r    617 TTGCATTTTCAGGAGATACCCGTTTATGCGAGAATATAACAAG-GCTTGC    665

BSNT_03547___    666 GAGGGATTGTGATGTGCTTGTTCATGAAGCAACCTTTGCTAAGGAAGACC    715
                     .|.||||...||||||.|.||.|||||||||||.||.|.|||.|||||..
BPUM_2115___r    666 CAAGGATGCGGATGTGTTAGTCCATGAAGCAACATTCGGTAAAGAAGATG    715

BSNT_03547___    716 GTAAACTTGCTTATGATTATTATCACAGTACAACGGAACAAGCGGCTGTA    765
                     .|.|.||.||.||..||||||||||||||||.||.||||||||.||...|
BPUM_2115___r    716 CTGATCTAGCCTACAATTATTATCACAGTACGACAGAACAAGCAGCGAAA    765

BSNT_03547___    766 ACAGCGAAAGAAGCAAGAGCGAAGCAG-CTCATTTTAACCCATATCAGCG    814
                     |||||..|.||||||.|.|| ||..|| .|.|||||.||||||||.||.|
BPUM_2115___r    766 ACAGCTCAGGAAGCAGGCGC-AAAAAGATTAATTTTGACCCATATTAGTG    814

BSNT_03547___    815 CAAGATATCAGGGAGATGCTTCTTTGGAGCT---TCAA------AAAGAA    855
                     ||.|.|||||.|||||.|      .||..||   .|||      ||||||
BPUM_2115___r    815 CACGTTATCAAGGAGAAG------AGGCACTAAACCAATTATTGAAAGAA    858

BSNT_03547___    856 GCGGTTGACGTTTTCCCCAATAGCGTG------GCGGCATATGATTTCTT    899
                     ||....||..|.|||||     || ||      ||.||..|.||||||| 
BPUM_2115___r    859 GCCCGCGATATATTCCC-----GC-TGACAGAAGCTGCGCAGGATTTCT-    901

BSNT_03547___    900 AGAGGTAAACGTC------------CCGCGAGGCTGA--    924
                              |.||            |||| |..|||.  
BPUM_2115___r    902 ---------CTTCTTTTTCAATTGACCGC-ACCCTGTAA    930


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