Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03545 and BPUM_2113
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:04
# Commandline: needle
# -asequence dna-align/BSNT_03545___yqjL.1.24716.seq
# -bsequence dna-align/BPUM_2113___yqjL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03545___yqjL-BPUM_2113___yqjL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03545___yqjL-BPUM_2113___yqjL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03545___yqjL
# 2: BPUM_2113___yqjL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 840
# Identity: 510/840 (60.7%)
# Similarity: 510/840 (60.7%)
# Gaps: 153/840 (18.2%)
# Score: 1290.5
#
#
#=======================================
BSNT_03545___ 1 ATGAAATCAGCTTGGATGGAAAAGA------CATATACAATTGACGG--- 41
|||||.||.||...|||.| ||||| |||||| ||.||
BPUM_2113___y 1 ATGAACTCGGCAATGATTG-AAAGAATGTATCATATA-----GATGGACA 44
BSNT_03545___ 42 --ATGTGCGTTTCATACACAGCACCG-------GAAAGGATCAAGCGGTG 82
|| |||.|||||.|.||.|| .||||| |||||
BPUM_2113___y 45 CCAT-----TTTTATACAAAACATCGTCAAGGTAAAAGG--CAAGC---- 83
BSNT_03545___ 83 TAACGATTGTCTTTGAGGCCGGCTATGGTACTTCTTCTGAGACGTG---G 129
.||.|||.|||||||.||.|||||.||.|.|||...|.|.||||| |
BPUM_2113___y 84 -CACCATTATCTTTGAAGCAGGCTACGGCATTTCCGGTAATACGTGGTCG 132
BSNT_03545___ 130 AAACCATTAATGGC---GGACATTGATGATGAATTTGGCATTTTCACATA 176
|| .||||| .||.||||||..|||..||||..|||||..|||
BPUM_2113___y 133 AA------TATGGCCCGTGATATTGATCCTGAGCTTGGGGTTTTCTTATA 176
BSNT_03545___ 177 TGATCGGGCAGGCATAGGAAAAAGCGGGCAAAGCAGAGCTAAACGAACAG 226
||||||...|||.|..|||||||||.|..|.||||| |.||.|||.|.
BPUM_2113___y 177 TGATCGATTAGGAAATGGAAAAAGCAGTGACAGCAG---TGAAGGAAGAA 223
BSNT_03545___ 227 C------TGATCAACAAGTGAAAGAATTGGAGAGTTTGCT--TA-AAGCA 267
| |||||.|..|| |.||.||.|| |..||| || |||.|
BPUM_2113___y 224 CATTACATGATCTAGCAG---ATGATTTAGA---TGCGCTACTAGAAGAA 267
BSNT_03545___ 268 GCTGATGTAAAACCTCCTTATTTGGCTGTTTCACACTCATACGGAGCTGT 317
||..||.|..|.||.||.|.|.|...|||..|.|||||||..||..||.|
BPUM_2113___y 268 GCCAATATTCAGCCGCCCTTTCTCATTGTAGCTCACTCATTTGGCTCTCT 317
BSNT_03545___ 318 CATCA-CCGGTTTATGGGCCTG-CAAAAACAAGTATGATATTATCGGCAT 365
..||| |||| |||||||||.| |..|.|..|| ||||..|.||.||.||
BPUM_2113___y 318 TGTCAGCCGG-TTATGGGCCAGCCGCAGAGGAG-ATGACGTCATTGGAAT 365
BSNT_03545___ 366 GGTCCTTCTTGACCCAGC--TTTAGGCG------------ATTGCGCCAG 401
|||.||..|.|||||||| .|.|||.| | |.|.||.|
BPUM_2113___y 366 GGTGCTGTTAGACCCAGCAAGTGAGGAGCAAGAACAGGTCA-TCCTCCCG 414
BSNT_03545___ 402 CTTTACCTTTATACCC----GAAGAAATGCACAGATCACATACGAGAAAG 447
|| ||||| | |||| ||.|||| |.|||||
BPUM_2113___y 415 CT-----TTTAT---CTAAGGAAG-AACGCAC----CTCATAC------- 444
BSNT_03545___ 448 ATGATGC---TT------GAGGGCACACATGCAGAGTTT--TCAAAAAGT 486
|||..|| || ||..|.||.||||..||.||| .||||
BPUM_2113___y 445 ATGGCGCAATTTACAGCAGAATGTACGCATGAGGACTTTCAGCAAA---- 490
BSNT_03545___ 487 CTGC-AGGAGCTCAA--AAAGCGG--CAAGTCCACTTA-GGAAACATGCC 530
||| | |||.||| ||||.|| |||..||| ||| ||||..|||||
BPUM_2113___y 491 -TGCTA--AGCACAATGAAAGAGGAACAAACCCA-TTATGGAATGATGCC 536
BSNT_03545___ 531 TCTTCTTGTGTTGTCATCAGG--AGAACGGACTGAGAAATTCGCTGCTGA 578
.||.|||||..|.|||||||| |||||.|..|| ||...|.|.|.
BPUM_2113___y 537 GCTCCTTGTCATTTCATCAGGTAAGAACCGGTTG-----TTTCATCCAGC 581
BSNT_03545___ 579 ACAGGAG---TGGC-AAAACTTGCACAGCAGCATATTGTCTCTATCTAAC 624
.||.||| |||| .|.|||| ||.|...|.||..|||||.|.||...|
BPUM_2113___y 582 GCACGAGGCTTGGCTCAGACTT-CATAAACGGATGCTGTCTTTGTCATCC 630
BSNT_03545___ 625 CAAAGCGGCTGGATTCAAGCTAAAAACAGCTCCCACAACATCCATCATGA 674
|||||.||.|||||||||||..|.||||||||.|||.|.||.||||||||
BPUM_2113___y 631 CAAAGTGGATGGATTCAAGCGCAGAACAGCTCGCACTATATTCATCATGA 680
BSNT_03545___ 675 TGAACCTCATATCGTTCA-CTTGGCTATTTATGACGTATGGTGCGCAGCG 723
||||||.|||||.||.|| ||| ||.||.|||||.||||||||||||||
BPUM_2113___y 681 TGAACCGCATATTGTACAGCTT-GCAATCTATGATGTATGGTGCGCAGC- 728
BSNT_03545___ 724 TGCCAGCAGGCCG-CTCCTCTTTACCAGGCAGTCAATTAA 762
|.|.||..|.| .|||| .|||.||..|||.|||||||
BPUM_2113___y 729 --CAAACAACCTGTTTCCT-ATTATCAAACAGCCAATTAA 765
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