Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03539 and BPUM_2109

See Amino acid alignment / Visit BSNT_03539 in genome browser / Return to Orthologue table 
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:04
# Commandline: needle
#    -asequence dna-align/BSNT_03539___proI.1.24716.seq
#    -bsequence dna-align/BPUM_2109___proI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03539___proI-BPUM_2109___proI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03539___proI-BPUM_2109___proI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03539___proI
# 2: BPUM_2109___proI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 923
# Identity:     548/923 (59.4%)
# Similarity:   548/923 (59.4%)
# Gaps:         181/923 (19.6%)
# Score: 1439.5
# 
#
#=======================================

BSNT_03539___      1 ATGAAAAAGATAGGATTTGTCGGCGCCGGGTCAATGGCAGAAGCAATGAT     50
                     ||||..||.||.||||||.|.||.||.||.|||||||||||..|.|||||
BPUM_2109___p      1 ATGAGTAAAATTGGATTTATTGGTGCAGGCTCAATGGCAGAGTCTATGAT     50

BSNT_03539___     51 CAACGGCATTTTGCAAAGCGGCATCA---CAAAACCAGAACACATCTAT-     96
                     .||.||..|.||..||||||||||||   ||||...|||       ||| 
BPUM_2109___p     51 AAAAGGTTTATTAAAAAGCGGCATCATGTCAAATGAAGA-------TATG     93

BSNT_03539___     97 ATT-------ACAAATCGCTCAAATGACGAGCGTCT-GATTGAATTAAAG    138
                     |||       |||||    .|||||||..|.||.|| || .|||||||||
BPUM_2109___p     94 ATTGTCACAAACAAA----ACAAATGAAAAACGGCTAGA-AGAATTAAAG    138

BSNT_03539___    139 GAAACGTACGGCGTGCGTCCATGCAGAGATAAAAATGAGTTTTTCACTC-    187
                                 |||||| .|||  |.|..||||..||   ||||.||| 
BPUM_2109___p    139 ------------GTGCGT-TATG--GGGTGAAAACGGA---TTTCTCTCG    170

BSNT_03539___    188 -----------------ACACCGATATCAT--TATCCTCGCTTTCAAACC    218
                                      |..|||||||..|  |||  |.|||||.|||||
BPUM_2109___p    171 TTCTTTTATTTATGAAGAAGCCGATATTCTCGTAT--TTGCTTTAAAACC    218

BSNT_03539___    219 GAAAGACGCGGCGGAAAGC-----ATC-GACAGCATCCGGCCGTATAT-C    261
                     ||||||   .|||||||||     ||| || ||  |.|||||..||.| |
BPUM_2109___p    219 GAAAGA---TGCGGAAAGCGGGATATCTGA-AG--TGCGGCCTCATTTAC    262

BSNT_03539___    262 AAGGATCAGCTTGTAATTTCAGTACTTGCAGGCCTTACCATCGAAACCAT    311
                     |||| .|||||..|.|||||..|..|.||.|||.|..||||||||||.||
BPUM_2109___p    263 AAGG-GCAGCTGATCATTTCGATTTTAGCGGGCATCTCCATCGAAACGAT    311

BSNT_03539___    312 TCAGCATTATTTTGGC-AGAAAGCTCGCGGTCATTCGCGTCATGCCTAAT    360
                     |||.||.|||..|||| ||||..|| ||.||..||||||..|||||.|||
BPUM_2109___p    312 TCAACACTATGCTGGCGAGAAGACT-GCAGTGGTTCGCGCGATGCCAAAT    360

BSNT_03539___    361 ACATCAGCGG-CAATCAGAAAATCAGCAACCGGATTTTCCGTAAG-CACG    408
                     |||||.|||| ||.|||| .||||||||||.|...||.||||.|| || .
BPUM_2109___p    361 ACATCTGCGGCCATTCAG-CAATCAGCAACAGCCATTGCCGTTAGTCA-A    408

BSNT_03539___    409 GAAG-----------CAAGCAAGAATGATATTATTGCCGCAAAAGC----    443
                     ||||           |||  |||||               ||||||    
BPUM_2109___p    409 GAAGTGACAGAGGATCAA--AAGAA---------------AAAAGCAATC    441

BSNT_03539___    444 --TCTATTGGAAACAATCGGTGATGCAACACTGGTTGAGGAGCGGCATCT    491
                       .||.||.|||||.||||||.|||..||..|..|.||.||....||.||
BPUM_2109___p    442 GAGCTGTTTGAAACGATCGGTCATGTGACGGTATTAGATGAATCACAGCT    491

BSNT_03539___    492 TGACGCTGTCACTGCAATCGCAGGCAGCGGCCCGGCCTATGTGTATCGTT    541
                     ..|.|||||.||.||.||.|||||.||||||||.||||.|.|.||||.||
BPUM_2109___p    492 AAATGCTGTTACGGCTATTGCAGGAAGCGGCCCAGCCTTTATTTATCATT    541

BSNT_03539___    542 ATATTGAGGCGATGGAAAAAGCAGC--------ACAAAAAGTAGGATTAG    583
                     ..|||||.|..||||       |||        .|..||..|.||| |.|
BPUM_2109___p    542 TGATTGAAGGAATGG-------AGCGTGGCGCTTCGGAACTTGGGA-TGG    583

BSNT_03539___    584 ATAAAGAAACGGCAAAAGCACTCATTTTGCAGACAATGGCAGGGGCAACA    633
                     |..|||.|||.||.||....|||||.|..||.|..||.||.||.||..||
BPUM_2109___p    584 ACCAAGCAACAGCGAAGTTGCTCATCTGCCAAATGATTGCGGGCGCCGCA    633

BSNT_03539___    634 GATATGCTCCTCCAAAGC---GGCAAACAGCCGGAAAAGCTGCGTAAAGA    680
                     .|.|||   ||.||||||   ||.|||.|.||.|...|.|||||.|||||
BPUM_2109___p    634 AACATG---CTTCAAAGCAGTGGTAAAGAACCTGCTGAACTGCGCAAAGA    680

BSNT_03539___    681 AATCACCAGTCCTGGGGGCACTACAGAGGCAGGTCT--TCGCGCTTTACA    728
                     ||||||.|||...||.||.||.|||||.||.||.||  .|.|.|||    
BPUM_2109___p    681 AATCACAAGTGAAGGCGGAACGACAGAAGCCGGCCTGAACACACTT----    726

BSNT_03539___    729 GGACTCC---CGCTTTGAAGAAGCAATTATTCACTGTATTGAA---GAAA    772
                      |..|||   |..|||||||||||..||.|..|.|||.|..||   |.||
BPUM_2109___p    727 -GCTTCCTATCAATTTGAAGAAGCCGTTGTCGATTGTGTCAAAACCGCAA    775

BSNT_03539___    773 CAGCTAAACGGAGC-GCAGAAATCAAAGAACAGTTTGCCGGTGCCGCCTT    821
                     ||   |||| |.|| ||||||.|.||.|||..||||.|            
BPUM_2109___p    776 CA---AAAC-GTGCAGCAGAATTAAACGAAATGTTTTC------------    809

BSNT_03539___    822 AGAG-AGACATTCTTAG------    837
                       || |.|||  |.||.      
BPUM_2109___p    810 --AGCAAACA--CGTATAAATGA    828


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