Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03537 and BPUM_2108

See Amino acid alignment / Visit BSNT_03537 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:04
# Commandline: needle
#    -asequence dna-align/BSNT_03537___yqjP.1.24716.seq
#    -bsequence dna-align/BPUM_2108___yqjP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03537___yqjP-BPUM_2108___yqjP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03537___yqjP-BPUM_2108___yqjP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03537___yqjP
# 2: BPUM_2108___yqjP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1113
# Identity:     615/1113 (55.3%)
# Similarity:   615/1113 (55.3%)
# Gaps:         315/1113 (28.3%)
# Score: 1470.5
# 
#
#=======================================

BSNT_03537___      1 -------ATGACAACTGAAGATGTAATTGCGATCCGCGTCCCGACGCCGT     43
                            |.||||.|     ||..||||   |||  |.|||||||.||.|
BPUM_2108___y      1 GTGAAAGAAGACATC-----ATTCAATT---ATC--CATCCCGACACCAT     40

BSNT_03537___     44 TTGCTGTCGGTGATGT-------TATCGTTTACCTCGTAAAAGGTGATGC     86
                     |.|||||.||.|||||       |||..||       ||||||||||.||
BPUM_2108___y     41 TCGCTGTGGGGGATGTACATGCATATATTT-------TAAAAGGTGAAGC     83

BSNT_03537___     87 ACTGACACTTATTG--ATGCAGGGCCGAATACAAAAGAGGCTGCCAG--A    132
                     ..|||| ||||.||  .||| |||||||..|||.|||||||.|  ||  .
BPUM_2108___y     84 TGTGAC-CTTAGTGGACTGC-GGGCCGATGACAGAAGAGGCGG--AGCAC    129

BSNT_03537___    133 GCC------------TTACAAGAGCAGCTTGCCGCTGTAAATGTGAAATT    170
                     |||            |||||.|||||.|        ||..||   .||||
BPUM_2108___y    130 GCCTTTGTCACGCAATTACATGAGCATC--------GTTTAT---CAATT    168

BSNT_03537___    171 GTCAGATATCGAGCAGGTTGTACTGACTCACCATCATGCTGATCATGCAG    220
                     |.| |||||.||.||.||.||..||||.||.||||||||.|||||||..|
BPUM_2108___y    169 GAC-GATATTGATCAAGTGGTGTTGACCCATCATCATGCCGATCATGTCG    217

BSNT_03537___    221 GCTTGCTTGATGTCTTT----TCAGATGAAA-------TCGAAGTGATTG    259
                                ||||||    ||.|||||||       ||...|||||.|
BPUM_2108___y    218 -----------GTCTTTTAAATCTGATGAAACCTCATGTCCGCGTGATCG    256

BSNT_03537___    260 GGCATGCA-TTCAACGAACCTTATATCAGCCGAAATCAAGCC------TT    302
                     |.||| || ||.||.||.||.|||||.|||      ||||.|      ||
BPUM_2108___y    257 GACAT-CAGTTGAATGAGCCGTATATTAGC------CAAGACCCTTTGTT    299

BSNT_03537___    303 TATGGATTGGCAA------------AAACGTTTTTTTCAAAAGCTGCTGC    340
                     ||..||..|.|||            ||||...|||||||..||       
BPUM_2108___y    300 TAAAGAGCGTCAAATTACTTTTACGAAACACCTTTTTCAGCAG-------    342

BSNT_03537___    341 CTGAATTAGGCGTTCCATT------TGAT-ACGGGGAAGGCGGAAAAGC-    382
                          |||||.||.||..|      |||| |..|.|||     |.||.| 
BPUM_2108___y    343 -----TTAGGTGTGCCGCTTCGCCCTGATGAGTGTGAA-----AGAATCG    382

BSNT_03537___    383 TGATGCGATCAGCGTACGCATTTTCCTGTAC--------GAGATCTCTGA    424
                     |||.||.||   ||||..|||.|||||||||        .|||    |||
BPUM_2108___y    383 TGAAGCAAT---CGTATACATATTCCTGTACTGCACATGTAGA----TGA    425

BSNT_03537___    425 CAAAATCAATCAGAGAAGG-TATGGGCATAG-ATGGGCTTGAGGGCTGGT    472
                     |...|||||    |||||| .||.||  |.| |.||||.|||  .|.|.|
BPUM_2108___y    426 CGTCATCAA----AGAAGGCGATCGG--TTGAAAGGGCATGA--ACAGTT    467

BSNT_03537___    473 CT--GTGTTGGAGATGCCTGGACATGCTGAATCGCATATCGTTCTGTTC-    519
                     ||  |||.|.||.|..||.||||||||..||||.|  |||.|||..||| 
BPUM_2108___y    468 CTACGTGATCGAAACACCGGGACATGCACAATCTC--ATCTTTCCTTTCT    515

BSNT_03537___    520 -CATGAAAAAAGCGGAAGGATGC-------TTGGCGGCGATCTACTGCTG    561
                      .||||||.|| |||      ||       ||||.||.|||||.||..||
BPUM_2108___y    516 AGATGAAACAA-CGG------GCCATTTCATTGGTGGAGATCTGCTTTTG    558

BSNT_03537___    562 GCCAACAGCTCGTCTAATCCGATTT--TGGAAGCGCCG---AAAGCGGGA    606
                     .|.|.||..||.||.||.||  |||  |||||||||||   .||| ||||
BPUM_2108___y    559 ACAACCATTTCCTCAAACCC--TTTAATGGAAGCGCCGTATGAAG-GGGA    605

BSNT_03537___    607 G--ACGTCAGGTCAAAGCCTTTAGTGGATTATCAGCGG--TCATTGCGAA    652
                     |  |||.||    |||              ||| ||.|  |||.|...||
BPUM_2108___y    606 GGAACGCCA----AAA--------------ATC-GCTGCTTCAATATAAA    636

BSNT_03537___    653 GGCTGTCTCA-------ACTTGATCCAACAAT-----CGTATT--TCCTG    688
                     |..|..||||       |||..|||.|.||||     || |||  |||.|
BPUM_2108___y    637 GCATCACTCAATCGATTACTACATCTACCAATCAAGACG-ATTTATCCAG    685

BSNT_03537___    689 GTCACGGCGAGCCTATCACCAGTGTACAAGCGCTGAT--TGA-------G    729
                     |.|||||..|||..|||||    ||       ||.||  |||       |
BPUM_2108___y    686 GCCACGGGCAGCTCATCAC----GT-------CTCATCATGAATTAATCG    724

BSNT_03537___    730 AAG--CGTTTTGACAAGCAGAGGAACAGGACGG------AGGATGTGCGT    771
                     |||  .|.|||.|.||.|| ||.||   .||||      |.|||||    
BPUM_2108___y    725 AAGAAAGATTTAAGAAACA-AGAAA---AACGGGCAAATACGATGT----    766

BSNT_03537___    772 CGCAT--GC----TGGATGAAAAGCCGATGACCGCTTTTCAGGTCTGT-C    814
                        ||  ||    |..|.|||||| ..|||||.||.|||||  |||.| |
BPUM_2108___y    767 ---ATCAGCTACTTAAACGAAAAG-AAATGACTGCCTTTCA--TCTTTGC    810

BSNT_03537___    815 AGC-AGCTTTTTCC--TGCTGTATATGAAAAGGAATTGTTTTTAACGATG    861
                     .|| ||||.|||||  |||  |.||.|||.|||..||.||||||||||||
BPUM_2108___y    811 CGCAAGCTATTTCCAGTGC--TTTACGAAGAGGCCTTATTTTTAACGATG    858

BSNT_03537___    862 TCAGAAACGGCAGGTCACCTTGATG---TGTTGGAGGCTGAAGAAGCCAT    908
                     ||.||.||.|..||.||.|||||||   |.||.||.||||          
BPUM_2108___y    859 TCGGAGACAGTTGGGCAGCTTGATGTCCTCTTAGAAGCTG----------    898

BSNT_03537___    909 CACGTCATATTG-GGAAG----GAAATACCGCATACTTTAAAACAATG--    951
                        |.||.|||| .||||    .|||.|..|.||.||.||..||||.|  
BPUM_2108___y    899 ---GACAAATTGAAGAAGTGCAAAAAGATGGAATTCTCTATTACAAGGCA    945

BSNT_03537___    952 ----AAGAGGTGA    960
                         ||       
BPUM_2108___y    946 AACTAA-------    951


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