Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03537 and BPUM_2108
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:04
# Commandline: needle
# -asequence dna-align/BSNT_03537___yqjP.1.24716.seq
# -bsequence dna-align/BPUM_2108___yqjP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03537___yqjP-BPUM_2108___yqjP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03537___yqjP-BPUM_2108___yqjP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03537___yqjP
# 2: BPUM_2108___yqjP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1113
# Identity: 615/1113 (55.3%)
# Similarity: 615/1113 (55.3%)
# Gaps: 315/1113 (28.3%)
# Score: 1470.5
#
#
#=======================================
BSNT_03537___ 1 -------ATGACAACTGAAGATGTAATTGCGATCCGCGTCCCGACGCCGT 43
|.||||.| ||..|||| ||| |.|||||||.||.|
BPUM_2108___y 1 GTGAAAGAAGACATC-----ATTCAATT---ATC--CATCCCGACACCAT 40
BSNT_03537___ 44 TTGCTGTCGGTGATGT-------TATCGTTTACCTCGTAAAAGGTGATGC 86
|.|||||.||.||||| |||..|| ||||||||||.||
BPUM_2108___y 41 TCGCTGTGGGGGATGTACATGCATATATTT-------TAAAAGGTGAAGC 83
BSNT_03537___ 87 ACTGACACTTATTG--ATGCAGGGCCGAATACAAAAGAGGCTGCCAG--A 132
..|||| ||||.|| .||| |||||||..|||.|||||||.| || .
BPUM_2108___y 84 TGTGAC-CTTAGTGGACTGC-GGGCCGATGACAGAAGAGGCGG--AGCAC 129
BSNT_03537___ 133 GCC------------TTACAAGAGCAGCTTGCCGCTGTAAATGTGAAATT 170
||| |||||.|||||.| ||..|| .||||
BPUM_2108___y 130 GCCTTTGTCACGCAATTACATGAGCATC--------GTTTAT---CAATT 168
BSNT_03537___ 171 GTCAGATATCGAGCAGGTTGTACTGACTCACCATCATGCTGATCATGCAG 220
|.| |||||.||.||.||.||..||||.||.||||||||.|||||||..|
BPUM_2108___y 169 GAC-GATATTGATCAAGTGGTGTTGACCCATCATCATGCCGATCATGTCG 217
BSNT_03537___ 221 GCTTGCTTGATGTCTTT----TCAGATGAAA-------TCGAAGTGATTG 259
|||||| ||.||||||| ||...|||||.|
BPUM_2108___y 218 -----------GTCTTTTAAATCTGATGAAACCTCATGTCCGCGTGATCG 256
BSNT_03537___ 260 GGCATGCA-TTCAACGAACCTTATATCAGCCGAAATCAAGCC------TT 302
|.||| || ||.||.||.||.|||||.||| ||||.| ||
BPUM_2108___y 257 GACAT-CAGTTGAATGAGCCGTATATTAGC------CAAGACCCTTTGTT 299
BSNT_03537___ 303 TATGGATTGGCAA------------AAACGTTTTTTTCAAAAGCTGCTGC 340
||..||..|.||| ||||...|||||||..||
BPUM_2108___y 300 TAAAGAGCGTCAAATTACTTTTACGAAACACCTTTTTCAGCAG------- 342
BSNT_03537___ 341 CTGAATTAGGCGTTCCATT------TGAT-ACGGGGAAGGCGGAAAAGC- 382
|||||.||.||..| |||| |..|.||| |.||.|
BPUM_2108___y 343 -----TTAGGTGTGCCGCTTCGCCCTGATGAGTGTGAA-----AGAATCG 382
BSNT_03537___ 383 TGATGCGATCAGCGTACGCATTTTCCTGTAC--------GAGATCTCTGA 424
|||.||.|| ||||..|||.||||||||| .||| |||
BPUM_2108___y 383 TGAAGCAAT---CGTATACATATTCCTGTACTGCACATGTAGA----TGA 425
BSNT_03537___ 425 CAAAATCAATCAGAGAAGG-TATGGGCATAG-ATGGGCTTGAGGGCTGGT 472
|...||||| |||||| .||.|| |.| |.||||.||| .|.|.|
BPUM_2108___y 426 CGTCATCAA----AGAAGGCGATCGG--TTGAAAGGGCATGA--ACAGTT 467
BSNT_03537___ 473 CT--GTGTTGGAGATGCCTGGACATGCTGAATCGCATATCGTTCTGTTC- 519
|| |||.|.||.|..||.||||||||..||||.| |||.|||..|||
BPUM_2108___y 468 CTACGTGATCGAAACACCGGGACATGCACAATCTC--ATCTTTCCTTTCT 515
BSNT_03537___ 520 -CATGAAAAAAGCGGAAGGATGC-------TTGGCGGCGATCTACTGCTG 561
.||||||.|| ||| || ||||.||.|||||.||..||
BPUM_2108___y 516 AGATGAAACAA-CGG------GCCATTTCATTGGTGGAGATCTGCTTTTG 558
BSNT_03537___ 562 GCCAACAGCTCGTCTAATCCGATTT--TGGAAGCGCCG---AAAGCGGGA 606
.|.|.||..||.||.||.|| ||| ||||||||||| .||| ||||
BPUM_2108___y 559 ACAACCATTTCCTCAAACCC--TTTAATGGAAGCGCCGTATGAAG-GGGA 605
BSNT_03537___ 607 G--ACGTCAGGTCAAAGCCTTTAGTGGATTATCAGCGG--TCATTGCGAA 652
| |||.|| ||| ||| ||.| |||.|...||
BPUM_2108___y 606 GGAACGCCA----AAA--------------ATC-GCTGCTTCAATATAAA 636
BSNT_03537___ 653 GGCTGTCTCA-------ACTTGATCCAACAAT-----CGTATT--TCCTG 688
|..|..|||| |||..|||.|.|||| || ||| |||.|
BPUM_2108___y 637 GCATCACTCAATCGATTACTACATCTACCAATCAAGACG-ATTTATCCAG 685
BSNT_03537___ 689 GTCACGGCGAGCCTATCACCAGTGTACAAGCGCTGAT--TGA-------G 729
|.|||||..|||..||||| || ||.|| ||| |
BPUM_2108___y 686 GCCACGGGCAGCTCATCAC----GT-------CTCATCATGAATTAATCG 724
BSNT_03537___ 730 AAG--CGTTTTGACAAGCAGAGGAACAGGACGG------AGGATGTGCGT 771
||| .|.|||.|.||.|| ||.|| .|||| |.|||||
BPUM_2108___y 725 AAGAAAGATTTAAGAAACA-AGAAA---AACGGGCAAATACGATGT---- 766
BSNT_03537___ 772 CGCAT--GC----TGGATGAAAAGCCGATGACCGCTTTTCAGGTCTGT-C 814
|| || |..|.|||||| ..|||||.||.||||| |||.| |
BPUM_2108___y 767 ---ATCAGCTACTTAAACGAAAAG-AAATGACTGCCTTTCA--TCTTTGC 810
BSNT_03537___ 815 AGC-AGCTTTTTCC--TGCTGTATATGAAAAGGAATTGTTTTTAACGATG 861
.|| ||||.||||| ||| |.||.|||.|||..||.||||||||||||
BPUM_2108___y 811 CGCAAGCTATTTCCAGTGC--TTTACGAAGAGGCCTTATTTTTAACGATG 858
BSNT_03537___ 862 TCAGAAACGGCAGGTCACCTTGATG---TGTTGGAGGCTGAAGAAGCCAT 908
||.||.||.|..||.||.||||||| |.||.||.||||
BPUM_2108___y 859 TCGGAGACAGTTGGGCAGCTTGATGTCCTCTTAGAAGCTG---------- 898
BSNT_03537___ 909 CACGTCATATTG-GGAAG----GAAATACCGCATACTTTAAAACAATG-- 951
|.||.|||| .|||| .|||.|..|.||.||.||..||||.|
BPUM_2108___y 899 ---GACAAATTGAAGAAGTGCAAAAAGATGGAATTCTCTATTACAAGGCA 945
BSNT_03537___ 952 ----AAGAGGTGA 960
||
BPUM_2108___y 946 AACTAA------- 951
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