Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03536 and BPUM_2107

See Amino acid alignment / Visit BSNT_03536 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:04
# Commandline: needle
#    -asequence dna-align/BSNT_03536___yqjQ.1.24716.seq
#    -bsequence dna-align/BPUM_2107___yqjQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03536___yqjQ-BPUM_2107___yqjQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03536___yqjQ-BPUM_2107___yqjQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03536___yqjQ
# 2: BPUM_2107___yqjQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 854
# Identity:     518/854 (60.7%)
# Similarity:   518/854 (60.7%)
# Gaps:         151/854 (17.7%)
# Score: 1471.5
# 
#
#=======================================

BSNT_03536___      1 --GTGA-----AACATATAGCGGGAAAAAGGATTTGGATAACCGGCGCTT     43
                       |.||     ||||       |||||.||.||.|||||.||.|||||.|
BPUM_2107___y      1 ATGGGACGATTAACA-------GGAAAGAGAATATGGATTACAGGCGCAT     43

BSNT_03536___     44 CAGGAGGGCTTGGTGAAAGAATCGCATACTTATGCGCGGCTGAAG-GAGC     92
                     |.||.||..|||||||||.|||.||.|||||   .||.||.|||| |.||
BPUM_2107___y     44 CTGGTGGCATTGGTGAAAAAATGGCGTACTT---GGCAGCAGAAGAGGGC     90

BSNT_03536___     93 CCATG---TCCTGCTGTCGGCTAGACGCGAGGATCGTTTGATAGAAA---    136
                     .|| |   |..|..|.||.||.|||||            .||.||||   
BPUM_2107___y     91 GCA-GAAATTATTATTTCAGCAAGACG------------AATTGAAAAGT    127

BSNT_03536___    137 -------TCAAAAGGAAAA---TAACCGAGGAATGGAG--------CGGA    168
                            |..|||.|||||   ||  ||||...|||.|        ||||
BPUM_2107___y    128 TAACGGGTGTAAAAGAAAAGATTA--CGAGTGCTGGCGGGGTGTGTCGGA    175

BSNT_03536___    169 CAGTGTGAGATTTTTCCTCTGGATGTCGGCCGCCTAGAGGATATTGCCCG    218
                     ..||| |||         ||.||||||.|.|.|||.|||||.||||..||
BPUM_2107___y    176 TCGTG-GAG---------CTAGATGTCAGTCACCTTGAGGACATTGATCG    215

BSNT_03536___    219 GGTCCGC----GATCAGA--TCGGCTCGGTTGATGTACTGATTAACAATG    262
                         |||    ||  |||  |.||..|.||||||.|..||.|.|||||||
BPUM_2107___y    216 ----CGCATATGA--AGAAGTAGGGGCAGTTGATATTTTGGTGAACAATG    259

BSNT_03536___    263 CGGGCTTCGGTATATTTGAAACGGTTTTAGACTCTACATTGGATGACAT-    311
                     |.||.||.|||...|||||....|||   ||         ||||| ||| 
BPUM_2107___y    260 CCGGTTTTGGTGCGTTTGACCTCGTT---GA---------GGATG-CATC    296

BSNT_03536___    312 -------GAAA-----GCGATGTTTGATGTGAATGTCTTCGGCCTGATCG    349
                            ||||     .||||||||||.||.||.||.||.||..|.||||
BPUM_2107___y    297 TATTGAGGAAATGGTGTCGATGTTTGAAGTAAACGTGTTTGGTTTAATCG    346

BSNT_03536___    350 CCTGTACAAAAGCGGTGCTTCCGCAAATGCTTGAGCAAAAAAAG------    393
                     ||||.||.|||..|||..|.||..|.|||       |||.||||      
BPUM_2107___y    347 CCTGCACGAAAAAGGTCATCCCAGAGATG-------AAACAAAGAGGACA    389

BSNT_03536___    394 -GGACATATCATCAATATCGCCTCTCAAGCGGGGAAAATCGCAACACCGA    442
                      ||||||||.||||||||||||||.||.||.||.||.||.||.||.||||
BPUM_2107___y    390 TGGACATATTATCAATATCGCCTCCCAGGCAGGCAAGATTGCCACCCCGA    439

BSNT_03536___    443 AGTCTAGCC-TGTATTCCGCTACCAAACATGCCGTGTTAGGTTACTCAAA    491
                     |.|| |||| |.|||||.||..||||.||||||||..|.||||..|||||
BPUM_2107___y    440 AATC-AGCCATTTATTCTGCATCCAAGCATGCCGTCCTTGGTTTTTCAAA    488

BSNT_03536___    492 CGCTTTGCGGATGGAGCTTTCGGGAACCGGCATTTATGTGACAACAGTCA    541
                     |..|.|..|.||||||||.||.|..|.|||||||.|.||.||.|||||.|
BPUM_2107___y    489 CAGTCTCAGAATGGAGCTGTCAGACATCGGCATTCACGTCACCACAGTGA    538

BSNT_03536___    542 ACCCGGGACCGATTCAGACGGACTTTTTTTCCATTGCTGATAAAGGCGGG    591
                     |.||.||.||||||...||.|||||.|||.||||.||.|||....||||.
BPUM_2107___y    539 ATCCAGGCCCGATTGCCACTGACTTCTTTACCATCGCCGATCGCAGCGGT    588

BSNT_03536___    592 GACTACGCCAAAAATGTCGGCCGCTG-------GATGCTTGATCCTGATG    634
                     ||.||.|..||.|||||       ||       |||||||..|.|.||..
BPUM_2107___y    589 GAATATGTGAAGAATGT-------TGAATTCATGATGCTTAGTGCGGACA    631

BSNT_03536___    635 ACGTAGC-----AGCTCAAATTACAGCTGCAATTTTTACGAAAAAGCGGG    679
                     |.||.||     ||.||..||     |.||.||..|.||||||||..|.|
BPUM_2107___y    632 AAGTGGCTGGGAAGGTCGTAT-----CCGCTATGATGACGAAAAAAAGAG    676

BSNT_03536___    680 AGATCAATCTTCCGCGTTTAATGAATGCCGGCACTAAGCTGTATCAGCTG    729
                     |.||.|||||.||..|||..||||||||.||||.|||..|.|||||..|.
BPUM_2107___y    677 AAATTAATCTGCCAGGTTGGATGAATGCTGGCAGTAAATTATATCAATTA    726

BSNT_03536___    730 TTTCCAGCTCTTGTAGAAAAGCTGGCAGGACGC---GCGTTCATGAAAAA    776
                     ||||||..|.|..|.|||||   .||||.||||   |||.|.||||||||
BPUM_2107___y    727 TTTCCATTTTTATTTGAAAA---AGCAGCACGCAAAGCGATGATGAAAAA    773

BSNT_03536___    777 ATAA    780
                     ||||
BPUM_2107___y    774 ATAA    777


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03536 and BPUM_2107

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
