Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03533 and BPUM_2105

See Amino acid alignment / Visit BSNT_03533 in genome browser / Return to Orthologue table 
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:04
# Commandline: needle
#    -asequence dna-align/BSNT_03533___coaA.1.24716.seq
#    -bsequence dna-align/BPUM_2105___coaA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03533___coaA-BPUM_2105___coaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03533___coaA-BPUM_2105___coaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03533___coaA
# 2: BPUM_2105___coaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 994
# Identity:     642/994 (64.6%)
# Similarity:   642/994 (64.6%)
# Gaps:         146/994 (14.7%)
# Score: 2086.0
# 
#
#=======================================

BSNT_03533___      1 GTGAAAAATAAAGAACTTAACCTACATACTTTATATACACAGCACAATCG     50
                                                                       
BPUM_2105___c      0 --------------------------------------------------      0

BSNT_03533___     51 GGCGTCTTGGTCTGGTTTTGGGGGGCATTTGTCGATTGCTGTATCTGAAG    100
                                                 .||.||.|..||||.||.||||
BPUM_2105___c      1 ----------------------------ATGCCGGTATCTGTTTCAGAAG     22

BSNT_03533___    101 AAGAGGCAAAAGCTGTGGAAGGATTGAATGATTATCTATCTGTTGAAGAA    150
                     |.||.||||.|||..|..|||||||.|||||.|||.||||..||||||||
BPUM_2105___c     23 AGGAAGCAAGAGCACTTCAAGGATTAAATGACTATTTATCGCTTGAAGAA     72

BSNT_03533___    151 GTGGAAACGATCTATATTCCGCTTGTTCGCTTGCT-TCATTTACATGTCA    199
                     ||..||...||.||.||.||.|||.||||.||.|| .|| ||.|||||| 
BPUM_2105___c     73 GTTCAAGATATTTACATACCACTTATTCGTTTTCTGACA-TTGCATGTC-    120

BSNT_03533___    200 AGTCTGCGGCTGAAC---GCAATAAGCATGTCAATGTTTTTTTGAAGCAC    246
                       |.|||.|...|||   ..|||.|||||||.||||..|||||.||..||
BPUM_2105___c    121 --TTTGCAGAAAAACAAAAAAATCAGCATGTGAATGCCTTTTTAAACTAC    168

BSNT_03533___    247 CCACATTCA-GCCAAAATTCCGTTTATTATCGGCATTGCCGGCAGTGTCG    295
                     ||.|| ||| ||.|||||.||.|||.|.||.||.|||||.||.|||||.|
BPUM_2105___c    169 CCGCA-TCATGCGAAAATCCCTTTTCTAATTGGGATTGCTGGAAGTGTGG    217

BSNT_03533___    296 CAGTCGGAAAAAGCACGACGGCGCGGATC-TTGCAGAAGCTGCTTTCGCG    344
                     |.|||||.||||||||.|||||.||.||| ||| |.|.||||.|.|||.|
BPUM_2105___c    218 CTGTCGGGAAAAGCACAACGGCCCGTATCATTG-AAACGCTGTTATCGAG    266

BSNT_03533___    345 TTTGCCT---GACCGTCCAAAAGTGAGCCTTATCACGACAGATGGTTTTT    391
                        ||.|   ||..|.|.|||||||||.|||.|.||.||.|||||.||||
BPUM_2105___c    267 ---GCTTGGAGATGGGCTAAAAGTGAGTCTTGTGACAACGGATGGCTTTT    313

BSNT_03533___    392 TATTTCCTACTGCCGAGCTGAAAAAGAAAAATATGAT------GTC-TAG    434
                     |.|.||           ||.||||||||..|.|.|||      .|| |.|
BPUM_2105___c    314 TGTATC-----------CTCAAAAAGAACTAAAGGATCGAGGGCTCATGG    352

BSNT_03533___    435 AAAA----GGGTTTCCTGAAAGCTATGATGTAAAGGCGCTG----CTCGA    476
                     ||||    ||.||.||.||||||||||||||.||.||..||    ||   
BPUM_2105___c    353 AAAAGAAGGGCTTCCCAGAAAGCTATGATGTCAAAGCCTTGTTGTCT---    399

BSNT_03533___    477 ATTTTTGAATGACTTAAAATCAGGAAAGGACAG--CGTAAAGGCCCCGGT    524
                      |||||.||.||.|||||||||||.||  ||||  .|||.|.||||||||
BPUM_2105___c    400 -TTTTTAAACGAATTAAAATCAGGGAA--ACAGACTGTACATGCCCCGGT    446

BSNT_03533___    525 GTATTCCCATCTAACCTATGACCGCGAGGAAGGTGTGTTCGAGGTTGTAG    574
                     .|||||.|||||.|||||||||||....|||||.||||..||....||.|
BPUM_2105___c    447 CTATTCGCATCTGACCTATGACCGGCTTGAAGGGGTGTATGAAACGGTGG    496

BSNT_03533___    575 AACAGGCGGATATTGTGATTATTGAAGGCATTAATGTGCTTCAGTCGCCC    624
                     |..|.||.||||||||.||||||||||||||.||||||||.||.|| |||
BPUM_2105___c    497 AGGATGCTGATATTGTCATTATTGAAGGCATCAATGTGCTGCAATC-CCC    545

BSNT_03533___    625 ACCTTGGAGGATGACC---GGGAAAACCCGCGTATTTTTGTTTCCGATTT    671
                     |.|  |..||||||.|   .|||..|.||||||.|.|||||.||.|||||
BPUM_2105___c    546 AGC--GCTGGATGATCTGAAGGATGAACCGCGTGTGTTTGTATCAGATTT    593

BSNT_03533___    672 CTTTGATTTTTCGATTTATGTGGATGCGGAGGAAAGCCGGATTTTCA--C    719
                     |||||||||||||||||||||.|||||||..||||  ||.|..||||  |
BPUM_2105___c    594 CTTTGATTTTTCGATTTATGTAGATGCGGCTGAAA--CGCAAATTCAATC    641

BSNT_03533___    720 TTGGTATTTAGAGCGTTTTCGCCTGCTTCGGGAAACTGCTTTTCAAAATC    769
                     .||||||..|||.||.||.||..||||..|||||||.|||||.|||.|.|
BPUM_2105___c    642 ATGGTATAAAGAACGGTTCCGTTTGCTGAGGGAAACAGCTTTCCAAGACC    691

BSNT_03533___    770 CTGATTCATATTTTCATAAATTTAAAGACTTGTCCGATCAGGAGGCTGAC    819
                     ||||.||.|..||||||.|||..|||||.|||.|.|||.|.|||||.||.
BPUM_2105___c    692 CTGAATCCTTCTTTCATCAATACAAAGATTTGACAGATGAAGAGGCAGAT    741

BSNT_03533___    820 GAGATGGCAGCCTCGATTTGGGAGAGTGTCAACCGGCCGAATTTATATGA    869
                     .|.||||||..|.|.||||||.|.|..|||||.||.||.|||||||||.|
BPUM_2105___c    742 CACATGGCAAGCACCATTTGGAATACGGTCAATCGCCCTAATTTATATCA    791

BSNT_03533___    870 AAATATTTTGCCGACTAAAT-TC-AGGTCAGATCTCATTTTGCGTAAGGG    917
                     |||||||||.|||||.|||| || ||  |.|||||.||||||...||.||
BPUM_2105___c    792 AAATATTTTACCGACAAAATATCGAG--CTGATCTTATTTTGAAAAAAGG    839

BSNT_03533___    918 AGACGGGCATAAGGTCGAGGA-AGTGCTGGTAAGGAGGGTATGA    960
                     .||..||||||||||.||.|| |.|||| .|..|..|.||||.|
BPUM_2105___c    840 TGATCGGCATAAGGTGGAAGAGATTGCT-ATCCGCCGAGTATAA    882


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