Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03530 and BPUM_2104
See
Amino acid alignment /
Visit
BSNT_03530 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:03
# Commandline: needle
# -asequence dna-align/BSNT_03530___yqjV.1.24716.seq
# -bsequence dna-align/BPUM_2104.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03530___yqjV-BPUM_2104.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03530___yqjV-BPUM_2104.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03530___yqjV
# 2: BPUM_2104
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1338
# Identity: 818/1338 (61.1%)
# Similarity: 818/1338 (61.1%)
# Gaps: 207/1338 (15.5%)
# Score: 2279.0
#
#
#=======================================
BSNT_03530___ 1 ATGAAGAAATGGAAAGATA-------TCCACCCGATCAGCTGGACAATTA 43
||||| |||| ||..|| |.||.|||.|.||.|||||.||.|
BPUM_2104 1 ATGAA-AAAT---AACTTACGTACGCTACATCCGCTTAGTTGGACGATCA 46
BSNT_03530___ 44 TAATCGGAACCATTTTCGGCAGAATGGCAACATCGATGAGCATTCCTTTT 93
|.|||||.|||||.||.|||.|||||||.|||||.|||||||||||||||
BPUM_2104 47 TCATCGGCACCATATTTGGCCGAATGGCGACATCCATGAGCATTCCTTTT 96
BSNT_03530___ 94 TTAGCGATTTATTTGACAGCCGTCCAAGGCGCATCAGCTTCCTATGCAGG 143
||.||..|||||||.|||...|||.|||||||.||||||||.|.|||.||
BPUM_2104 97 TTGGCCGTTTATTTAACACAAGTCAAAGGCGCCTCAGCTTCTTCTGCTGG 146
BSNT_03530___ 144 GCTGGTCATTGCCGCGAGCTCATCAG-TCGGCATCCTCGCAAGCTTTTAC 192
..|..|||||||||..||||| ||.| |.||.|||.|.|||||.||||||
BPUM_2104 147 ATTAATCATTGCCGTTAGCTC-TCTGATTGGGATCGTTGCAAGTTTTTAC 195
BSNT_03530___ 193 GGCGGATATATCTCAGATAAATTCGGCAGAAAAAACATGATGCTTGTATC 242
||.||||||||.||.|||....||||.||||||||..|.||||||.||||
BPUM_2104 196 GGTGGATATATTTCTGATCGTATCGGAAGAAAAAAGGTCATGCTTCTATC 245
BSNT_03530___ 243 GATTTTCGGATGGATGCTGGTATTTGCAGGCTTTGC---GGCGGCATCTC 289
.||.||.||.||||..||.||.||||..|||||||| .||.| ||..|
BPUM_2104 246 AATCTTTGGCTGGACACTTGTCTTTGTTGGCTTTGCATTTGCAG-ATGCC 294
BSNT_03530___ 290 ATCTCTGGGTGTTTTTTGTAGTTAACGCATTAAACGGTCTTTGCAAATCA 339
| |.|||||.||.|||.|..|.|||||.||||||||.||.|||..|.||
BPUM_2104 295 A--TTTGGGTCTTCTTTATCATGAACGCTTTAAACGGACTGTGCCGAGCA 342
BSNT_03530___ 340 CTGTTTGAGCCCGCTTCAAAGGCCTTGCTGTCTGATATGACAGAAGAAAA 389
||||||||.||..|.||.|||||..|..|.||||||.|.||...|..||.
BPUM_2104 343 CTGTTTGAACCAACATCTAAGGCACTCTTATCTGATGTCACTCCATCAAG 392
BSNT_03530___ 390 AACGAGACTGCTAGTTTTTAATTTACGCTATGCAGCTATTAATATCGGTG 439
.|...|..||.|.||.|||||||||||.|||.||||.|||||.||.||.|
BPUM_2104 393 TATTCGGTTGTTTGTGTTTAATTTACGATATACAGCCATTAACATAGGGG 442
BSNT_03530___ 440 TTGTCTTCGGACCTGTGCTTGGCCTATATTTCGGCTCATCGCAATCGACT 489
|..|||||||.|||.|.||||||.|||||.||||.||||||.||.|.||.
BPUM_2104 443 TCATCTTCGGTCCTCTACTTGGCTTATATCTCGGGTCATCGAAAACAACC 492
BSNT_03530___ 490 ACGCCCTTTTTGGTGCCTGCAGTCATTTACGGCCTATACGGAATTGTGCT 539
...||.|||.|.||..||||..|||||||.....||||||||.|...|||
BPUM_2104 493 TTTCCATTTCTCGTCGCTGCCTTCATTTATTTGTTATACGGATTAACGCT 542
BSNT_03530___ 540 TGCCCTCCAATTTAAAAAACATCCA--TCCTTATCAGCACCAGCCCAGTC 587
.|||...||||||.|.||.|||||| |.|| ||.|||| ..|||
BPUM_2104 543 AGCCTGGCAATTTCAGAAGCATCCAGTTGCT-----GCTCCAG-AAAGT- 585
BSNT_03530___ 588 CCGAAATA---TGAGCGTGCGGGAAGCGTTT---ATGGTCACGCAAAAGG 631
.|||||.| || |.||.....||||..|| ||..|| |||||.|
BPUM_2104 586 ACGAAACAAATTG-GTGTCAAAAAAGCTCTTTCCATTATC---CAAAAAG 631
BSNT_03530___ 632 ATTATCTTTTTACCATTGCTTTGGTCGGCATTACGCTATGCACCTTCGGC 681
||....|.||||.||||....|..|||||.||||..||||..|.||.||.
BPUM_2104 632 ATACGGTCTTTAGCATTATCCTCATCGGCGTTACCTTATGTTCGTTTGGG 681
BSNT_03530___ 682 TACTCACAATTTAGTTCCACATTCCCTCAGTATATGGCGCAGAACCCCT- 730
||.||.||.||.||.||.|||.|.|||||.|||.| |.||.||
BPUM_2104 682 TATTCGCATTTGAGCTCAACACTGCCTCAATATTT-------ATCCGCTT 724
BSNT_03530___ 731 ------TGATCGGCAATGGAACGAAGCTGTACGGGCTGATGC----TGAC 770
||||.|...||||..||||.||||..| |||.| |..|
BPUM_2104 725 CGCCTATGATTGAGGATGGTCCGAAACTGTTTG----GATACCTTTTATC 770
BSNT_03530___ 771 ATTAAACGCAATCGT----AGTGTTGGCGACGCAATTTCC---CATTGTC 813
.|||||.|||.|.|| |.||||| ..||||.||| |||
BPUM_2104 771 TTTAAATGCAGTTGTTGTCATTGTTG----TACAATATCCGCTCAT---- 812
BSNT_03530___ 814 CAT-TTTGCAAAACGGT---------TTTCGCCGCT-----------TTG 842
||| .|.||.||.||.| |||.|.|||| .||
BPUM_2104 813 CATGATCGCCAAGCGCTACTCCACCATTTTGTCGCTCACCACTGGAAATG 862
BSNT_03530___ 843 TTC-TCTGATGCTCGGTAATGTGATGGTTAGCATCAGCATGGCCATTTTC 891
||| |||| || |||.| |.|.|||.|| |||.| |.|||||
BPUM_2104 863 TTCTTCTG--GC-CGGCA----GTTTGTTTGC-----CATTG-CTTTTTC 899
BSNT_03530___ 892 ACCGTATC---GCACGGT--GTTCCATCAATTGTGATGATTGTCATCACA 936
||.|..|| |||.|.| .||.|||| ||||||.| .
BPUM_2104 900 ACAGAGTCTCGGCATGCTTGCTTTCATC----------ATTGTCGT---G 936
BSNT_03530___ 937 TTTACAATCGGCGAAGTTCTTTTATTCTCTATGATGGATTTGTATGTAGA 986
||||||||.||.||.|||||..|.||..|.||||||||..|.|.||||||
BPUM_2104 937 TTTACAATAGGAGAGGTTCTGCTGTTTGCGATGATGGACCTTTTTGTAGA 986
BSNT_03530___ 987 CCAGATTGCAAAACCAGGATTAAAAGGCACTTATTTCGGGGCAATCGGTT 1036
|.|..|.|||||.||.|.|.||||.||..|.||.||.||.||.||.||.|
BPUM_2104 987 CAATGTGGCAAAGCCCGAAGTAAAGGGATCGTACTTTGGCGCGATGGGAT 1036
BSNT_03530___ 1037 TTTCACAGCTCGGAAACGTCATCGGCCC--TTGGATCGGGGGGATATGTA 1084
||||.||||||||.|.|||||||||.|| ||| ||||.||..|.||.|
BPUM_2104 1037 TTTCTCAGCTCGGCAGCGTCATCGGACCATTTG--TCGGCGGACTGTGCA 1084
BSNT_03530___ 1085 TAGACCTGTTTAGCGCTGGCCGGCCGATTTATATTTTTTCTGTCCTGAGC 1134
|.|||...|||.||||.|.||..||..|.|..||||||||.|||.|| .|
BPUM_2104 1085 TTGACTATTTTGGCGCAGCCCATCCCTTCTCCATTTTTTCAGTCTTG-TC 1133
BSNT_03530___ 1135 G-GCATTACCCTGCTCG-GCCTGCCATTTTTAGCGTTCGCCTA-TCGGCA 1181
| .|||.|| |.||| |..|| |..|||| |||| ||
BPUM_2104 1134 GATCATCAC---GATCGCGGGTG-------TTCCGTT--CCTACTC---- 1167
BSNT_03530___ 1182 AATGAAAATGGAGACCACAAAACACCGTTCCCGTCTGGAAAAGC------ 1225
|.||||.|| |.|||.|||.||||||
BPUM_2104 1168 ------ATTGGATAC-------------TACCGCCTGAAAAAGCGATCCG 1198
BSNT_03530___ 1226 ----------CGCTTTAA-------------------- 1233
||||.|.|
BPUM_2104 1199 CGGCTACGGTCGCTGTGAAAGTAAGTGGAGGTCATTAA 1236
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.