Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01258 and BPUM_2101
See
Amino acid alignment /
Visit
BSNT_01258 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:50
# Commandline: needle
# -asequence dna-align/BSNT_01258___yfmQ.1.24716.seq
# -bsequence dna-align/BPUM_2101___yfmQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01258___yfmQ-BPUM_2101___yfmQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01258___yfmQ-BPUM_2101___yfmQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01258___yfmQ
# 2: BPUM_2101___yfmQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 516
# Identity: 286/516 (55.4%)
# Similarity: 286/516 (55.4%)
# Gaps: 135/516 (26.2%)
# Score: 643.5
#
#
#=======================================
BSNT_01258___ 1 ATGACATGGG---CGATCGTGATGTTAATTCTCATG--------AGTCTG 39
|.|| .||| |||||.|||.|.|| |||||
BPUM_2101___y 1 ------TTGGTTTGGAT-----TGTTACTTCACTTGTTGTGTTTAGTCT- 38
BSNT_01258___ 40 GTGAAAATCGTAT--TAACCTGTCTTCCTACAGGCGTCATAGAATGGCT- 86
|..|||.|.|.| |.||.|..||.|||.|.||.||..|.|||.|.||
BPUM_2101___y 39 -TTTAAAGCTTCTTGTCACTTCGCTGCCTTCTGGTGTTGTGGAACGCCTT 87
BSNT_01258___ 87 ----GCTCGGCAAATT-TGAAGTGCACGCCAAGCTTAGTGGCGAAAATGC 131
| ||| || ||.||||||.||.|| ||| ||.|.|.
BPUM_2101___y 88 TTTAG-TCG-----TTATGCAGTGCATGCAAA----AGT----AACAAGT 123
BSNT_01258___ 132 GAGTCTCTCTCTA-----GAT---------GGAAAACGT---CTCGAGGG 164
|| ||.| ||| || |.||| |||||.|.
BPUM_2101___y 124 GA-------TCAAACAACGATCATGTTTGAGG--ATCGTCCGCTCGATGA 164
BSNT_01258___ 165 TACAGAGAAGCA---GAAAGTGATTGATCAATTTAACGAAGCTGTCTTCC 211
| || |.||||| ||.| |.|||.|.||.|||||.||.||..||||..
BPUM_2101___y 165 T-CA-ACAAGCATCTGACA-TTATTCAACATTTTAATGATGCGATCTTTA 211
BSNT_01258___ 212 TGGAGAAATATTATATCTATCCAGGTGATGAAGAGCGTTATTTACATCCG 261
|.||....||||||||.|||||.||||||||.|||||||.|.|.||||||
BPUM_2101___y 212 TTGAACGCTATTATATTTATCCTGGTGATGAGGAGCGTTTTCTTCATCCG 261
BSNT_01258___ 262 GA-AAATGGC--GGCACGCCGCTGGTGATA-GATACAAAAAAA----GGA 303
.| .||.||| | ||||||| || .||.||||.||| ||.
BPUM_2101___y 262 CAGGAAGGGCCTG---CGCCGCT-----TACTATGCAAACAAAGCTTGGT 303
BSNT_01258___ 304 AAAAAAGACGTGAAGCTGT-TCGTGTACCGCTACGACGACCATATCGACG 352
||..|.||.||||..||.| || ||||.|..|||||.|||||..|.||.|
BPUM_2101___y 304 AAGCATGATGTGACCCTTTATC-TGTATCATTACGATGACCACGTAGATG 352
BSNT_01258___ 353 TCGT---GAAACAGTAC----------AAGAAGAAAGTGATCGCGTATCG 389
|.|| |.|| ..||| |||||.|||.|||..||.|||||
BPUM_2101___y 353 TGGTTCGGCAA-TTTACTCATAAGCCTAAGAAAAAACTGACGGCCTATCG 401
BSNT_01258___ 390 AGTGCTTTCTGAAAGC--CTTCAAAAAGAGTCTCTGTCAGTGGCGGGAAG 437
..|||.||||| ||| ||.||||.| |||..| |.
BPUM_2101___y 402 TTTGCGTTCTG--AGCCGCTCCAAACA-----TCTTAC----------AA 434
BSNT_01258___ 438 TTTA------GCTTAA 447
|||| ||||||
BPUM_2101___y 435 TTTAGCACATGCTTAA 450
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.