Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03524 and BPUM_2100
See
Amino acid alignment /
Visit
BSNT_03524 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:03
# Commandline: needle
# -asequence dna-align/BSNT_03524___yqjY.1.24716.seq
# -bsequence dna-align/BPUM_2100___yqjY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03524___yqjY-BPUM_2100___yqjY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03524___yqjY-BPUM_2100___yqjY.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03524___yqjY
# 2: BPUM_2100___yqjY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 551
# Identity: 312/551 (56.6%)
# Similarity: 312/551 (56.6%)
# Gaps: 130/551 (23.6%)
# Score: 832.0
#
#
#=======================================
BSNT_03524___ 1 ---------------------ATGGATATTCGAACAATCACGT-----CT 24
||| ||.|| |||.|| |.
BPUM_2100___y 1 ATGAAAAGGGGCGAGGTCATCATG---ATACG-----TCAAGTGAAGCCG 42
BSNT_03524___ 25 TCAGATTATGAAATG--GTAACGTCTGTACTGAATGAA--TGGTGGGGCG 70
|||||||.| .||| ||..|.||.||..|..| || ||||||||.|
BPUM_2100___y 43 TCAGATTTT--TATGCCGTCTCATCCGTCATCCA--AAGCTGGTGGGGAG 88
BSNT_03524___ 71 GCAGACAGCTGAAAGAAAAATTGCCGAGACTATTTTTTGAGCATTTTCAG 120
|.||..|..||...|.|||||||||||.||||||||||||.|||||||||
BPUM_2100___y 89 GTAGGGATTTGCGCGCAAAATTGCCGAAACTATTTTTTGAACATTTTCAG 138
BSNT_03524___ 121 GACACAAGCTTTATTACATC--CGAACA----TAACAGCATGACCGGATT 164
.|.|||||.|||.| |.|| ||||.| .||| |||..||.||
BPUM_2100___y 139 CAAACAAGTTTTGT--CGTCGTCGAAAAAGGGGAAC----TGATTGGCTT 182
BSNT_03524___ 165 TTTAATCGGATTTCAATCGCAATCGGATCC---TGAAACGGCGTACATTC 211
||||.||||.|||..|||||||||..||.| |||| |||||.||||
BPUM_2100___y 183 TTTAGTCGGTTTTTTATCGCAATCTCATTCAGATGAA---GCGTATATTC 229
BSNT_03524___ 212 ATTTTTCCGGTGTGCATCCAGATTTCAGAAAAATGCAAATTGGGAAA--- 258
|.|||...||.||.|||||.|||..|.|.|||.|..|.||.||.|||
BPUM_2100___y 230 ACTTTGTTGGGGTACATCCTGATCACCGGAAATTAAAGATCGGCAAAATC 279
BSNT_03524___ 259 ------CAA---TTGTATGATGTATTTATCG----AAACAGTAA------ 289
||| ||.||||| |.|| ||| ||.||
BPUM_2100___y 280 CTCTATCAAGCGTTTTATGA-------AGCGGCTCAAA-AGGAAGGGAGA 321
BSNT_03524___ 290 --AACAA--AGAGGCTGCACCCGGGTGAAGTGCGTCACTTCACCTGCGAA 335
||||| | |.||| |||||..|.||||..||
BPUM_2100___y 322 ACAACAATTA-AAGCT-----------------GTCACAGCTCCTGTTAA 353
BSNT_03524___ 336 TAAGGTATCAATCGCATATCACACAAAATTGGGGTTTGATATTGAAAAGG 385
||..||.||.||.||.||.||.||||||.|.||.|||.|.||.|||||||
BPUM_2100___y 354 TAGAGTCTCCATTGCTTACCATACAAAACTCGGTTTTCAAATCGAAAAGG 403
BSNT_03524___ 386 GCACCAAGACGGTAAATGGCATCTCAGTGTTTGCAAACTATGATGGC--- 432
|....||.||.||..|.|||||.|||||.|||.||.|.||.||.|||
BPUM_2100___y 404 GAGATAAAACAGTGGACGGCATTTCAGTTTTTTCAGATTACGACGGCATT 453
BSNT_03524___ 433 CCGGGCCAAGACAGGGTACTGTTTGTCA------------AAAACATATG 470
|..| |||||.|.||..|.|||||.| ||||..||||
BPUM_2100___y 454 CATG---AAGACCGTGTGTTATTTGTGAAAAAGCTGGAGGAAAAGGTATG 500
BSNT_03524___ 471 A 471
|
BPUM_2100___y 501 A 501
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.