Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03522 and BPUM_2099
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:03
# Commandline: needle
# -asequence dna-align/BSNT_03522___yqkA.1.24716.seq
# -bsequence dna-align/BPUM_2099___yqkA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03522___yqkA-BPUM_2099___yqkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03522___yqkA-BPUM_2099___yqkA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03522___yqkA
# 2: BPUM_2099___yqkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1175
# Identity: 607/1175 (51.7%)
# Similarity: 607/1175 (51.7%)
# Gaps: 340/1175 (28.9%)
# Score: 1179.5
#
#
#=======================================
BSNT_03522___ 1 ATGATTGAATT--TCTC---CAGCATAAGGAAGA-CACTATAGCGCGTGA 44
||||| .||| .||| ||.||.||..|||| || |||.....|
BPUM_2099___y 1 ATGAT--CATTCGGCTCGATCAACAAAACAAAGAGCA----AGCAAAACA 44
BSNT_03522___ 45 GATTTTAGCCGTACAGATCC------CCGCCTACATAA-----AGGAAAC 83
.|||| ||||.|||| |||| |.||.| ||| |
BPUM_2099___y 45 AATTT------TACATATCCAACTTGCCGC--ATATCAGCGCGAGG---C 83
BSNT_03522___ 84 AGAGATTATCGGTTTTGACGGTATTCCCGCTTTACAAGAGAAGGTGAAGG 133
|||....||.||.|.|.|.|.|.|.||..|.|||.||.|.|.|||.||.|
BPUM_2099___y 84 AGAACAAATTGGCTATCAAGATTTACCACCCTTAAAACAAACGGTCAAAG 133
BSNT_03522___ 134 A---TATTCAAGCATCCCATGAGCGGTTTGCGGGATATCGGAAAAACGGC 180
| |||..||.|| .|||||..|||....||.|.|..||.|.|.||.
BPUM_2099___y 134 ACATTATGAAAACA---GATGAGAAGTTCATAGGGTTTGAGACAGAAGGA 180
BSNT_03522___ 181 AAGCTGATCGGTGTCATTTCATATGAGAAAAACATGCATCA--------- 221
.||.||.|.||..||..|||||||| |.||||||.|
BPUM_2099___y 181 CAGTTGTTAGGAATCGCTTCATATG------AAATGCATGAGGACCGGAT 224
BSNT_03522___ 222 ---TCTCA--CCATTTGCAGGCTTGTTGTGCATCCTGACGGTTTCAGAAA 266
.|||| |.|||.|| ||||||.|||.|...|.||....|
BPUM_2099___y 225 TGTCCTCAGCCGATTGGC--------TGTGCACCCTCATCATGTCCATCA 266
BSNT_03522___ 267 AGGAATTGGACGAGCGCTTCTGCAATTTGTCATTGATC-ATAATGAAGAC 315
||||||.|||..|..|||..|||||| ||||| ||| ||.||.||
BPUM_2099___y 267 AGGAATCGGAACAAAGCTGATGCAAT---TCATT-ATCAATCATCAA--- 309
BSNT_03522___ 316 GCTGAGAA--AATCGAAGT-AGTCACAGCCGAGAAC-AATACCCCGGCTG 361
|| | |||.||..| |.| ||.||.|| |.| ||||||||.|| |
BPUM_2099___y 310 -CT----ACCAATTGAGCTCACT-ACGGCGGA-AGCGAATACCCCAGC-G 351
BSNT_03522___ 362 TGTCA-CTCTATACACAGGCCGGATTCCAAAAGGCAGAAACCGT---CAA 407
..||| ||||||..|.||...||.||.|||.||.|.| |.||| |||
BPUM_2099___y 352 ATTCAGCTCTATGAAAAGCTAGGGTTTCAACAGACGG--ATCGTTTACAA 399
BSNT_03522___ 408 AGCAGCGCAG----------GGTCT--------ATTG--CTGTCGGT-CT 436
|.|| |.||| ||.| |.||||.| ||
BPUM_2099___y 400 ------GTAGAAAACAATCTGATCTTAACCAAAATGGAACGGTCGATGCT 443
BSNT_03522___ 437 TTCATTTGTATCCGAAA---AGAAAAG-TTG-AGATCATTCTCTACAACG 481
| ||||| ||||..| ||| |.|||| ||||
BPUM_2099___y 444 T-----------CGAAAGGTAGAAGTGATTGAATATCA--------AACG 474
BSNT_03522___ 482 AAAAATGGGCA---GAATGTTTCGATGA---AGAAAAAGAACGGCTGAAA 525
|..|||.|| ||||||..|..||| .|..|| |||||||
BPUM_2099___y 475 --AGCTGGCCAGACGAATGTCGCCGTGAGCTTGCCAA------GCTGAAA 516
BSNT_03522___ 526 CTTGTGTTCGGGCCGGA----GATTATCGCTGTTCATCACATCGGAAGCA 571
...|||.| ||||.|.| |.|.| .||.|||.|||||.||.||.|
BPUM_2099___y 517 GAGGTGGT-GGGCAGTAACTGGGTAA---ATGGTCACCACATTGGCAGTA 562
BSNT_03522___ 572 CATCAATACCGAA--CATGGCAGCGAAGCCAATCATTGATATGTTAATTG 619
|.||||| |.|| .|||||.||.|||||.|||||||||||..|..|.|
BPUM_2099___y 563 CGTCAAT--CAAAGGTATGGCCGCCAAGCCGATCATTGATATCCTGCTAG 610
BSNT_03522___ 620 AAGTCAGAAGCAT-TGAAGCCGTGAGCCAATTT-GATGAACAAATG-AAG 666
|||| |||.||| |.| ||| |||| |||| |.|| ||
BPUM_2099___y 611 AAGT--GAAACATATTA----GTG-----ATTTAGATG----AGTGTAA- 644
BSNT_03522___ 667 GCCAAC--------------GGCTATACACCAAAAGGTGAGAACGGTATA 702
|||.| ||.|||..||||..|| ||||| |||.
BPUM_2099___y 645 -CCATCTGTTTCGTCAGCTTGGATATGAACCACTAG--GAGAA---TATG 688
BSNT_03522___ 703 G-----CGGGCAGGCGTTATTTCCAAAAGGGCGGAAATAAACGCACTCAT 747
| ..||.||.||||.|||...|||.|||||....||.||..|.|||
BPUM_2099___y 689 GACTTCAAGGAAGACGTTTTTTTAGAAAAGGCGGTTTGAATCGATCACAT 738
BSNT_03522___ 748 CATGTCCA----TATGTACGAACAGG---GAAACCCTGCTATTGAAAGGC 790
||.||.|| |||| .|||.|| .|| ||.|.|..||||.|
BPUM_2099___y 739 CACGTTCACGCCTATG---AAACTGGTCATAA----TGATGTGAAAAGAC 781
BSNT_03522___ 791 ATCTGTTATTCAGAGATTATCTCAGAGCTCATCCAAACAT-AGCG----A 835
||.||.|.||..|.||||||.|.|.|| ||.| ||.| |||| .
BPUM_2099___y 782 ATTTGGTGTTTCGTGATTATTTAAAAG--CAGC---ACCTGAGCGTGCCG 826
BSNT_03522___ 836 AAGAATACGCCGTTCTCAAAAAA----CAGCTGGC---GGCCCAGCACCC 878
|||..||.||.|.| ||||| ||..|||| .||| ||.||
BPUM_2099___y 827 AAGCTTATGCAGAT----AAAAAGCGCCAATTGGCAAAAGCC---CATCC 869
BSNT_03522___ 879 TGACAGCAT-----CAATCAGTATATACAA-GGGAAAGATGAGTGGATCA 922
.|| || || .||| ||||| ||| ||.|||||||.|...||.|
BPUM_2099___y 870 GGA-AG-ATATGGAAAAT---TATAT-CAATGGAAAAGATGCGATTATTA 913
BSNT_03522___ 923 ---AGACTGCAGAAGA-------AAATG--CGAAGCGGTGGAAA---AAA 957
|||.||.|.|||| ||||| |.||||.||.|||| |||
BPUM_2099___y 914 AAGAGATTGAACAAGAGGCATACAAATGGTCAAAGCAGTTGAAAGGCAAA 963
BSNT_03522___ 958 GGCAGAAACAATGCGAATGGCAGTATTGTATGCTACAATAGCGAAAATGA 1007
||..|..||| ||||.
BPUM_2099___y 964 GGACGGGACA-----------AGTAA------------------------ 978
BSNT_03522___ 1008 TGAAAACGGGGGTTTCACCTTATGA 1032
BPUM_2099___y 978 ------------------------- 978
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