Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03520 and BPUM_2098
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:02
# Commandline: needle
# -asequence dna-align/BSNT_03520___yqkB.1.24716.seq
# -bsequence dna-align/BPUM_2098___yqkB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03520___yqkB-BPUM_2098___yqkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03520___yqkB-BPUM_2098___yqkB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03520___yqkB
# 2: BPUM_2098___yqkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 354
# Identity: 231/354 (65.3%)
# Similarity: 231/354 (65.3%)
# Gaps: 57/354 (16.1%)
# Score: 748.5
#
#
#=======================================
BSNT_03520___ 1 ATGAACATACATGTGACAGATGCAG---------------CAAAACAGGC 35
|||.|.||.|||.|.|||||..||| |||||| |.|
BPUM_2098___y 1 ATGTATATTCATATAACAGAACCAGCAGCAGCGTTCCTTACAAAAC-GAC 49
BSNT_03520___ 36 ACTGCAGCAG-GCGTTTGACGCCAACCCGGGAAAAAAAGCCCAG---CTT 81
| ||||| || .||| ||| ||||.|| |.| |||
BPUM_2098___y 50 A----AGCAGAGC--ATGA----AAC----GAAAGAA----CTGCTTCTT 81
BSNT_03520___ 82 CGTTACGATGCAGAAGGATGCGGCTGCGCGGTAAGCGGTGTCCCGACAAT 131
||.||.|||.||||.|||||||||||.|||||||||||||||||.|..||
BPUM_2098___y 82 CGCTATGATTCAGATGGATGCGGCTGTGCGGTAAGCGGTGTCCCCATGAT 131
BSNT_03520___ 132 CTGGCTGGCAGAAGAATTAACGGGACAGTGCGAGCAGCTGGAAACGAACG 181
.|||||...||..|||..||||||..||||.||.|||||..|
BPUM_2098___y 132 TTGGCTCATAGGTGAAAGAACGGGTGAGTGGGAACAGCTCAA-------- 173
BSNT_03520___ 182 GCAT--TCCG---------CTGTATATCCAATCGTCGCAAAAAGTGTTTT 220
|||| ||.| ||||||||.||..|..|.|||||.||.||||
BPUM_2098___y 174 GCATAATCAGCCATTTAAACTGTATATACACACAGCACAAAAGGTCTTTT 223
BSNT_03520___ 221 TTGACGATCAAATGACGATCGATTACAATGAAAAAGCCAAAACATTGGCG 270
|||||||..|||||||.||.||||..||||||||||||||.|||.|...|
BPUM_2098___y 224 TTGACGAGGAAATGACCATTGATTTTAATGAAAAAGCCAACACACTCATG 273
BSNT_03520___ 271 CTGAAAAGCCCGGCTGAAATGCTCAGCCCCAGAATGAGCATATTAGTAAA 320
|||||||||||.....||||.||||||||.||||||.|.|||.|..||||
BPUM_2098___y 274 CTGAAAAGCCCTCAACAAATACTCAGCCCGAGAATGGGTATACTTCTAAA 323
BSNT_03520___ 321 GTAG 324
|||.
BPUM_2098___y 324 GTAA 327
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